Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5285 ATGTTGTATTTCTTTGTCTTTTTGTCATTTCTGTTGTTAGTGTTGTTTTCCTTTATCTGTCAGTTGCTTCTGAAACAGAAGGAGGATATAGCAGCAAAGACCATGTCAAACAACGCTCCTCATACAAAAGACAAGTATGATGTTTTTGTTAGCTTCAGGGGCGAGGACATTCGCGACGGTTTTCTCAGCCATCTGGCAGAGGCTTTTCGTCGAAAGAAAATAAATGCCTTCGTGGATGACAAGCTTCAGAGGGGAGAAGAAATATGGCCATCACTTGTTGGAGCCATTGAAGGATCATTGGTTTCATTGATCATATTCTCTGAAAACTACGCTTCTTCACGTTGGTGTTTGAACGAACTGGTGAAAATACTTGAGTGCAGAGGCAAGTATGAACAGATTGTAGTACCAGTTTTCTACGGCGTAGATCCCACCGATGTACGACACCAAACAGGGAGTTATGAAACTGCATTTCTTGAGCATGGGAAATATTTTGATCCGACCATGCTGAAAATATGGAGTGATGCTTTGAACAAATCTGCTGATTTATCTGGAATTAAGTCATCAGATTCTCAGAATGATGCTGAGCTACTTGATAATATCACCAATGATGTGTTGCATCAGCTAAGTAGGTTGAGTAAGCACACACTTAACTCAAAAGGACTTGTTGGAATTGGAAAATCATTTGCTGATGTAGAAGCCTTGCTGCTTAAAGACTCAAAAGATGTCCGCATTATCGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGCAGAACAAGTGTTCAATAAAATATGTTCTGAGTATGAAGGTAGCTGTTTTTTGTCAAATGTAAGAGAAGACTCAACAAGACATGGAATAATTTATTTGAAAGAAAAACTTTTCTCCACACTATTAGCAGAAGATGTGAAAATGAAGTCACCAAATGGATTGTCTGATGATATTGGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTTGAATTATTTGGAACTGTTGACACGTTTGGACCAGGTAGTAGAATAATTGTAACAACTAGAGATCAACAAGTGCTCATCGCTAATAAAGTTGATGATATACTTCACGTTGGAGAATTGAGCTCTAGTGAATCACTTGAGCTTTTCAATTTGATTGCCTTGAACCATAGTCACCTTGTAAGGGAGTACTATGAGCTAACAAAGAGGGTAGTCAAATATGCCAATGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTTGTGGAAGAGATCAGAAAGCATGGGAAAGTCAGCTAGATAAGCTTATGGAAATGCCAAGTAAAAAAGTTTATGATGTAATGATATTGAGTTATGATGATCTAGACCGAAAAGAGCAACAAATTTTTCTGGATCTTGCATGTTTCTTTAAAGGATTGAATTTGAAGGTGGACTCCATCAAAACTTTACTGAAAGATAATGAAAGTGATAATTCAGTGGCTCATGGGTTAGAGAGGCTGAAAGATAAGGCTCTTATAACTATTTCTGAGGATGATGTTGTATCTATGCATGATATTATAGAAGAAATAGCTTGGGAGATTGTTCGCCAAGAATCTAGAGAAGACATTGGAAGCCAAAGTCGATTGGGGGATGCAGATGACATTAACAAAGTATTAGAAAATGACAAGGGGAAAGAGGTTGTTAGAAGTTTACGGATGCACTCGTCAACAATGAGGACCAGGAAGCTCAAGTTAAGCTCTCACATATTTGTTATGATGAGCAAACTACAATTTCTAGATTTTTATAGTGACCATAATATTCTAGACAGTGATGTTCTTCTTCCTAAAGGACTGAAATCATTGCCAACTGAACTAAGATATCTTCGTTGGTGGCATTACCCTTTGAAATCCTTGCCAAAGAAATTTTGTGCAGAGAAACTTGTTATATTGGACTTGTCACGTAGCAATGTGAGAAGACTTTGGCACGGAGTCCAGAACCTGGTTAATTTAAAACAAGTTAAACTCTATCGTTGTGCATCCTTGAAGGAGCTACCAGACTTTTCAAAAGCCACAAATCTTGAAGAAGTAAATGTCATGCATTGTTATGACTTGACTGATGTGCATCCGTCTATTTTCACTCTTGACAAGCTTGAGAAATTGGAGCTTAGTCGCTGCTCTTCCCTCACCAGCCTTACAAGCAATGCTCAATTAAGCTGCCTCAGTCATGTACTATGTAACTCTCGATCTTTGGAGGAGCTTCCAGACTTTTCAAAAGCCACAAATCTTTTAGTGCTTGATGCAAGTTACTGTGATCGGTTGACTAATGTGCATCCGTCCGTGTTTTCTCTTGACAAGCTTGAGAAATTGGATCTTAGTTTCTGCTCTTCCCTCACCAGCCTTACAAGCAATGCTCAATTAAGCTGCCTCAGTCATCTCAACCTACAAAGTTGCAGTAAACTAACAGAATTCTCTGTGACATCAGAGAATATGGTAGAACTAAAACTAGGAGGAACTAAAATCAAAGCATTGCCCCCATCATTTGGTAGTCAAAGAAAGCTTGAAATTCTATATTTAGAAGAAACTATAATTGAGAGCTTACCATCATGCATGGTGAATCTCACAAGACTACGATATCTAGACCTAAGATTTTGTTCTATGCTTCAAACAATTCCAGAGTTTCCACCGTCCCTTGAAACTCTACTTATCCAAGACTGCAGTTCATTGAAGACAGCGTCGTTCCCTTCAACAGCTACTAAACAATTCCAGGAGAACAAGAAAAGGGTCGAGTTCTTTAATTGTGAGAGGTTGGATGAAGATTCTCTCATGGCTATTGGGTTGAATGCGCGTATCAATGTGATGAAATTTGCACAGCAACATCTATCTGCATTGAAGCATGATTTTGTTGAAAACTATGATGATTACTTCCATAATTATCATTCTTATCAGTCTGTGCATGTATTTCCAGGAAGCAGAGTACCAGAGTGGTTGGTATATAAGTCAACGAGGGGTTCTGTAATTATTGATCTCTTTTCTCCTCCAACTTCCCCTCCGTATGGCTTCATTTTCTGCTTCATCATTTATGAGTACCGAGTGTATCGGACCAGATTGAAATTCAAAGTCAGCATCAGGGATAGTGCAGGTGAAGATGATGCTGGTGAAGATGAAAAGGATAGCGTTGATGTTTACACGTCTTTTAACTACTCAATTTTCACAAGAGATCATGTGTGTGTGATATACGACCAAAGATGTTCTCGCTACTTAAGTAGTAGATCACAAAATCTGTCAAGGTTCCAAATCAAGGCTACCGCATGGTTTGTAGTACTTGGTGAAAAACAGAGGATAGAATTAAAAGCGTTTGGGGTGAGCCTAATAAGCACATCCGCGTATGACAGGTTCGTTCGACAAAAGGAATTGCATGATTCAGAGGGTATCTCTGTTCATTAA 3435 0.3875 MLYFFVFLSFLLLVLFSFICQLLLKQKEDIAAKTMSNNAPHTKDKYDVFVSFRGEDIRDGFLSHLAEAFRRKKINAFVDDKLQRGEEIWPSLVGAIEGSLVSLIIFSENYASSRWCLNELVKILECRGKYEQIVVPVFYGVDPTDVRHQTGSYETAFLEHGKYFDPTMLKIWSDALNKSADLSGIKSSDSQNDAELLDNITNDVLHQLSRLSKHTLNSKGLVGIGKSFADVEALLLKDSKDVRIIGIWGMGGIGKTTIAEQVFNKICSEYEGSCFLSNVREDSTRHGIIYLKEKLFSTLLAEDVKMKSPNGLSDDIGRRISRMKVLIVLDDVNDSDQLELFGTVDTFGPGSRIIVTTRDQQVLIANKVDDILHVGELSSSESLELFNLIALNHSHLVREYYELTKRVVKYANGIPLVLKVLGHLLCGRDQKAWESQLDKLMEMPSKKVYDVMILSYDDLDRKEQQIFLDLACFFKGLNLKVDSIKTLLKDNESDNSVAHGLERLKDKALITISEDDVVSMHDIIEEIAWEIVRQESREDIGSQSRLGDADDINKVLENDKGKEVVRSLRMHSSTMRTRKLKLSSHIFVMMSKLQFLDFYSDHNILDSDVLLPKGLKSLPTELRYLRWWHYPLKSLPKKFCAEKLVILDLSRSNVRRLWHGVQNLVNLKQVKLYRCASLKELPDFSKATNLEEVNVMHCYDLTDVHPSIFTLDKLEKLELSRCSSLTSLTSNAQLSCLSHVLCNSRSLEELPDFSKATNLLVLDASYCDRLTNVHPSVFSLDKLEKLDLSFCSSLTSLTSNAQLSCLSHLNLQSCSKLTEFSVTSENMVELKLGGTKIKALPPSFGSQRKLEILYLEETIIESLPSCMVNLTRLRYLDLRFCSMLQTIPEFPPSLETLLIQDCSSLKTASFPSTATKQFQENKKRVEFFNCERLDEDSLMAIGLNARINVMKFAQQHLSALKHDFVENYDDYFHNYHSYQSVHVFPGSRVPEWLVYKSTRGSVIIDLFSPPTSPPYGFIFCFIIYEYRVYRTRLKFKVSIRDSAGEDDAGEDEKDSVDVYTSFNYSIFTRDHVCVIYDQRCSRYLSSRSQNLSRFQIKATAWFVVLGEKQRIELKAFGVSLISTSAYDRFVRQKELHDSEGISVH* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5285 1144 Gene3D Ribonuclease Inhibitor 565 788 IPR032675 -
Lja1g5285 1144 PRINTS Disease resistance protein signature 244 259 - -
Lja1g5285 1144 PRINTS Disease resistance protein signature 319 333 - -
Lja1g5285 1144 PRINTS Disease resistance protein signature 778 794 - -
Lja1g5285 1144 PRINTS Disease resistance protein signature 411 425 - -
Lja1g5285 1144 Pfam NB-ARC domain 234 446 IPR002182 GO:0043531
Lja1g5285 1144 SMART till_3 45 182 IPR000157 GO:0007165
Lja1g5285 1144 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 744 1138 - -
Lja1g5285 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 470 IPR027417 -
Lja1g5285 1144 ProSiteProfiles TIR domain profile. 44 208 IPR000157 GO:0007165
Lja1g5285 1144 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 41 741 - -
Lja1g5285 1144 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 184 IPR035897 -
Lja1g5285 1144 Gene3D Ribonuclease Inhibitor 801 938 IPR032675 -
Lja1g5285 1144 Pfam TIR domain 45 224 IPR000157 GO:0007165
Lja1g5285 1144 Gene3D - 214 371 IPR027417 -
Lja1g5285 1144 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 741 IPR044974 GO:0006952
Lja1g5285 1144 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 744 1138 IPR044974 GO:0006952
Lja1g5285 1144 Gene3D - 43 213 IPR035897 -
Lja1g5285 1144 Gene3D - 376 460 IPR042197 -
Lja1g5285 1144 SUPERFAMILY L domain-like 520 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5285 Lja-Chr1 80843692 80849125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5285 46 844 WRKY Transcription Factor Family AT4G12020 31.902 3.70e-89 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5285 - - aprc:113850949 1101.27