Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5284 ATGACAGTTTCAGAGTCAAACGGTGGTGGTGACGTTTTCCCATGGCTGAAGTCGATGCCAGTGGCGCCGGAGTACCGGCCAACCGCGGCGGAGTTCGAAGACCCAATCGCCTACATTTTCAAGATCGAGAAGGAAGCATCCAAGTTCGGCATCTGCAAGATCATCCCTCCCTACCCTGCGCCGCCGAGGAAAACCGCTATCGCCAACCTCCACCGCTCCCTCCCCGGCCCCACATTCACCACACGCCAGCAGCAGATCGGGTTCTGCCCCCGCAAGGCCCGACCCGTTCAGCGCCCTGTTTGGCAGAGCGGTGACAGCTACACCTTCCAGGAGTTCGAGCTCAAGGCCAAGAATTTCGAGAAAACGCATTTCAAGCGCCACGGCAAACACCACGGCGGCGCTGCTGGTTGCAAGGGTCCCCTTGAAACGGAGACATTGTTCTGGAAAGCCACCGTGGACAAACCTTTCTCCGTCGAGTACGCCAACGACATGCCGGGGTCGGCGTTTTCTCCGAAATGCCGCCGCGGCGCCGGGGAGCCTGCGTCGCTGGCCCACACTGGTTGGAACATGAGAGAGGTTTCCAGGGCGGGTGGGTCTCTGTTGAGGTTCATGAAGGAGGAGATTCCTGGTGTGACTTCACCAATGGTGTATGTTGCTATGATGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTTCACAGCTTGAATTACCTCCACATGGGTGCTGGGAAGACCTGGTATGGTGTCCCTAAGGATGCTGCTGTTGCATTTGAGGAGGTTGTTAGGGTTCATGGCTATGGCGGAGAGATAAACCCTCTTGTTACTTTTTCTATTCTTGGTGAGAAGAACACAGTGATGTCGCCTGAAGTATTAGTTAGCGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGTTTGCTAAGGAAGCTGCTATTCGGAGGGCTTCGATAAACTACCCTCCCATGGTTTCTCATTTCCAGTTACTTTATGACCTTGCCTTGGCTTTGAGTTCTAGAAACCCTGGACAAATCAGTGCTGAACCTCGGAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAGCTGTAATCAAAGAACTTTTTGTGCAGGATGTGTTACAGAACAATTATATACTTCATGTATTCGGAAAAGAGTCTCCTGTAGTACTTCTTCCTCGCTGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGCGTTGGATGCCAGCAGCTAAAAGTGAACCCTGGGTTTTCCGTGAATGTAGGCATTTCTGAGGGAATGAACTCCTCAAAAGATTTTGTTTCTGATGGTGTGGACAGGAATCATGGAATCAGGCAAGAAAAAAGTTTCTATTTTGTGAAAGACAAGTTTACTACAGTGTGTGAAAAGAGCAGGATTTCCTCATTTGATTCAAATGGTAACACATGCACTTCAAGTTCTAAGCCACTTCAAAGAGAGAGTGAAACTAGACAAGAAGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACATGTGGAGTATTAAGCTTTTCCTGTGTTGCAATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCTGCTGATTGTAGCTTCATTAATGATTGGGTTGTTGGTTCTGGAGTACCCAGCAATAAATTTACTGTCGCAAATGAAGATGCAAATATTCCTGAGCCAAATATGTATGCAGGGTGGACAAAAAAGAATGCCCAAGGTGGTTTGTATGATGTTCCTGTTCAATCTGCTCATGACCAGATACTGAATGTAGACCAGATACTGAATGTAGATCGGAATTATAAGGAGGCTGTAAATACTGAAAGAGGAAAATGCAATACTGCCCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGGGTGACCTTGATATTGTAGTTGAAGGTCATGAATCAAATGATATAAACTCATCAGGAAAATTGCCTTCTCATTTTCGGGATTCCCATCCTAGTCTCGTGACTGAACTTGATAGGCAAGATGATATTCCCTCAACGAGTGCCAGTTATGAGGATTATATGCATCATAGATTTGAGAGTGATTTGAGTCATCAGTCTTTTGACCATTCTTTTGAGAACCAGGATTACAAAATCACTTCAGGGGCTGCATTTATAAATACAAGGGCAGTTCCTGATCCCACTTCTAACTGTTCCCAATCTGATGAAGACTCATGTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAGGCAGAGAAGCGACTTCGCCCCATAGGAGGAGCCAACATATTGCTACTTTGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGTGGCAGAAGATTTGGCGATTGATTACATGTGGAAGGATATTGCATATAGGCGTGCCACCATAGAGGATGAGGAGAGGATAAAGTCAGCTCTGGATAGTGAAGAAGCTATTCCTGGGAATGTGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATCATGCATTTGGTCGTAGCTCTCCAGCAAGCTCGCCCACAAAACCAAAAGTCTATCAGAGAAGGGCCAGCAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGCGGTAAAGTTTGGATGTCCAATCAGGTCCACCCCCTTCTTGTAAAAAGAGATCCTGAAGATGTTGAGGATGAGACAATCTTACATCGGAGGGTATTACCAGATGAGAAAATTGTGAGATCAAAAAATATCCCCAAAAATGAAACTACTGTAAAAAAATATGGCAGGAAAAGGAAAATGACTGTAGAGTGTAGGCGAACTAGGAAAGGAAGTTTTGCTGAGAAAGATGTGGTTTCAGATAATGCCACTGAAGATAAACCCAATCCTAAGCAAAGGAGGATTTTGAGAAGTAAGAAAGCTAGACATGTTGAGAGAGAAGGTGAAGATTTGGAAAGGGATTATTCTTCTCCACATCATAGAAATCACATAAGCAAGCAAACAAGCACTGAATGTGGTGCAGTTTCTGATGATTTGTTTGATGGTAATCATGACGCACGGCATAGGAGTTTTGATGTCAAAAAAGAAAAATTTATTGACAGTGATGTGATTTCAGATGATGCAGTGGAATATGATTCTGATTGGCAGCAGAGGGGAGAGCTTCGAAGCAAGCATGCTGAAGACAGAGAGAGAGACTCAATTTCAGAGGATTCTATGAGTATTGCTTCCCTTCAGCTGCAAAGGAAGACTTCTAAAAGTAAGCATGCCCAATACATTCGTGAAGAAGATGCAATTTCTGATGACCAAATGGAGAATCATTGTCAGAAGCAGCAAAAGAGAATCCCTAAAAGCAGGCAACGCAAATACCTTGCTCAAAAAGATATAATGATTTCTGATGACCAGCTGGAGCTGAACATGCGGAAGCAGTGGCAGGGTAATTCTAAAAGTAGGAAAGCCAAATACCTTGCTGAAGAGGATAGCATATCAGATGACCAACTCGAGGACAATTGTGACAAGTATCAGAGTAGGACTCCTAATGGCAGAGAAGCTGAGTGTGTTGCAGGGGAAGATGTGATGTCTGACGACCAATTGGAGGATGCCTTTCAGAAGCAGCAGAGAAGATTTCCTAGGAGCAGGCAAAGCAAACGCATTGATAAAGAAATTGTGGATGACTCTGCTGAAAATATTTCTCATGTGCTGCATAAAACTCCAAAAAGGAAGCATGCTAAATGCACAGATGATGATGGTATGAATTCAGATGATGAAATGGAAGATGATTCTCATCAGCAGCAGAAGAGAACTCTTCGAACTAAACAATCTAAACCAAAGACACTTTGGCAGATGAAACAACCTAATTGCCTCCTAGTGAAAAACCAGACATCTCAGCCGGTAAAACGAGGGGTGGCACGGATGCTGGTGAAATCAAAGGCTCCACAGCAAGTAAAACAGTCTTCTCGTTTGCGGATTAAGCAACCTGGTAACTCCAGAGAGTTAAATTTGCAGGTGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTGAGGAAGAGAGCTCCAAAGGCTCAGGAGTCTGAAGGAAAGTTGAAAGTCAAGCAAACCAAAAGGAGAAAGGAGAAGAATGCTACTGCTGCAAAGGTTTCAGCTGGCCGTGCCAAAAGGAAAAATGAGGAAGCAGAATTCCAGTGTGACATTGAGGGGTGCACCATGACTTTTGGGTCAAAACAGGAGCTGACGCATCACAAGAAAAATATCTGTCCTGTGAAAGGTTGTGCGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGCCCCTTGAGGTGCCCTTGGAAAGGATGCAAGATGACTTTCAAATGGGCATGGGCTCGTACAGAGCATATTCGAGTACACACTGGTGCACGTCCTTATGCATGTGCTGAGCCAGGTTGTGGGCAAACATTCAGATTTGTGTCTGACTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAAAAGAGTAGTCAATAG 4677 0.4492 MTVSESNGGGDVFPWLKSMPVAPEYRPTAAEFEDPIAYIFKIEKEASKFGICKIIPPYPAPPRKTAIANLHRSLPGPTFTTRQQQIGFCPRKARPVQRPVWQSGDSYTFQEFELKAKNFEKTHFKRHGKHHGGAAGCKGPLETETLFWKATVDKPFSVEYANDMPGSAFSPKCRRGAGEPASLAHTGWNMREVSRAGGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAAVAFEEVVRVHGYGGEINPLVTFSILGEKNTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKEAAIRRASINYPPMVSHFQLLYDLALALSSRNPGQISAEPRSSRLKDKKKGEGEAVIKELFVQDVLQNNYILHVFGKESPVVLLPRCSVDISVCSKLRVGCQQLKVNPGFSVNVGISEGMNSSKDFVSDGVDRNHGIRQEKSFYFVKDKFTTVCEKSRISSFDSNGNTCTSSSKPLQRESETRQEDGLSDQRLFSCVTCGVLSFSCVAIVQPREPAARYLMSADCSFINDWVVGSGVPSNKFTVANEDANIPEPNMYAGWTKKNAQGGLYDVPVQSAHDQILNVDQILNVDRNYKEAVNTERGKCNTALALLASAYGNSSDSEEDQGDLDIVVEGHESNDINSSGKLPSHFRDSHPSLVTELDRQDDIPSTSASYEDYMHHRFESDLSHQSFDHSFENQDYKITSGAAFINTRAVPDPTSNCSQSDEDSCRMHVFCLEHAAEAEKRLRPIGGANILLLCHPDYPKIEAEAKLVAEDLAIDYMWKDIAYRRATIEDEERIKSALDSEEAIPGNVDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYHAFGRSSPASSPTKPKVYQRRASKQKKVVAGKWCGKVWMSNQVHPLLVKRDPEDVEDETILHRRVLPDEKIVRSKNIPKNETTVKKYGRKRKMTVECRRTRKGSFAEKDVVSDNATEDKPNPKQRRILRSKKARHVEREGEDLERDYSSPHHRNHISKQTSTECGAVSDDLFDGNHDARHRSFDVKKEKFIDSDVISDDAVEYDSDWQQRGELRSKHAEDRERDSISEDSMSIASLQLQRKTSKSKHAQYIREEDAISDDQMENHCQKQQKRIPKSRQRKYLAQKDIMISDDQLELNMRKQWQGNSKSRKAKYLAEEDSISDDQLEDNCDKYQSRTPNGREAECVAGEDVMSDDQLEDAFQKQQRRFPRSRQSKRIDKEIVDDSAENISHVLHKTPKRKHAKCTDDDGMNSDDEMEDDSHQQQKRTLRTKQSKPKTLWQMKQPNCLLVKNQTSQPVKRGVARMLVKSKAPQQVKQSSRLRIKQPGNSRELNLQVEEEEEGGPSTRLRKRAPKAQESEGKLKVKQTKRRKEKNATAAKVSAGRAKRKNEEAEFQCDIEGCTMTFGSKQELTHHKKNICPVKGCAKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHSAKKSSQ* 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1096 1121 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1359 1380 - -
Lja1g5284 1558 ProSitePatterns Zinc finger C2H2 type domain signature. 1467 1489 IPR013087 -
Lja1g5284 1558 Pfam JmjC domain, hydroxylase 215 333 IPR003347 -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1355 1432 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 997 1052 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 505 521 - -
Lja1g5284 1558 ProSiteProfiles Zinc finger C2H2 type domain profile. 1525 1556 IPR013087 -
Lja1g5284 1558 SUPERFAMILY Clavaminate synthase-like 197 365 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1249 1268 - -
Lja1g5284 1558 ProSitePatterns Zinc finger C2H2 type domain signature. 1527 1551 IPR013087 -
Lja1g5284 1558 SMART JmjN_1 21 62 IPR003349 -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 997 1014 - -
Lja1g5284 1558 ProSiteProfiles Zinc finger C2H2 type domain profile. 1465 1494 IPR013087 -
Lja1g5284 1558 ProSiteProfiles Zinc finger C2H2 type domain profile. 1495 1524 IPR013087 -
Lja1g5284 1558 Gene3D Classic Zinc Finger 1463 1549 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1381 1432 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1096 1118 - -
Lja1g5284 1558 SUPERFAMILY beta-beta-alpha zinc fingers 1505 1549 IPR036236 -
Lja1g5284 1558 Pfam jmjN domain 23 56 IPR003349 -
Lja1g5284 1558 Gene3D Cupin 15 355 - -
Lja1g5284 1558 SMART c2h2final6 1525 1551 IPR013087 -
Lja1g5284 1558 SMART c2h2final6 1442 1464 IPR013087 -
Lja1g5284 1558 SMART c2h2final6 1495 1519 IPR013087 -
Lja1g5284 1558 SMART c2h2final6 1465 1489 IPR013087 -
Lja1g5284 1558 ProSitePatterns Zinc finger C2H2 type domain signature. 1497 1519 IPR013087 -
Lja1g5284 1558 ProSiteProfiles JmjC domain profile. 182 351 IPR003347 -
Lja1g5284 1558 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 5 1548 - -
Lja1g5284 1558 SMART cupin_9 182 351 IPR003347 -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 505 529 - -
Lja1g5284 1558 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 1548 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1277 1331 - -
Lja1g5284 1558 MobiDBLite consensus disorder prediction 1023 1048 - -
Lja1g5284 1558 ProSiteProfiles JmjN domain profile. 22 63 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5284 Lja-Chr1 80769627 80778145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5284 1141 1558 C2H2 Transcription Factor Family AT3G48430 37.130 2.53e-71 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g5284 JmjC 4.2e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5284 - - gmx:100775271 2189.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5284 1 80769627 80778145 Lja1g5284 1 80769627 80778145 ECH
Lja1g5284 1 80769627 80778145 Lja4g2365 4 26490332 26498781 PCT