Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5283 ATGGGGTCATCCAACTCAAGTCACCCACAATTCACCCCTATTCCTCATCATGATCACGATCCTCAACCCTCAGATCTCAATCACCTTGCTCAGGTTCATGATGATGCACTTGCTGGGGACCTACACAACAAGTTGGATTTCAAAGATGGGGATGATGAAACTCAGAATAAAGGTTCAAACTTTGAACCTGGACATGGACAATTGTATGATGAAGCTGCTGTCCCAGAACCTGTAAAGGAACAAAGGTCTGATGATGGTGCTGATAGCAATGAACAGTTGCATGATGAAGCTGCTGTCCCAGAACCTGATAAGGAGCAAAAGTGTGATGCTGACGATGAACAGCTGAATTATGAAGCTGCTGTTCCAGAACCAGGAAAGGAACAAAGGTGTGATGATGATGATGGTCTTGGTAATCAACAGTTGAATGATGAAGCTGCTGTTCAAGAACCTTGTAAGGAGCAAAAGTGTGATGATGTCCATGATGGTGATGAACAGTTGTATGATGAAGCTGCTGTCCCAGAACCTTGTAAGGAGCAAAAGTGTGATGATGTCCATGATGGTAATGAACAGTTGTATGATGGAGCTGCTGTCCCAGAACCTGCCAAGGAACAAAGGTGTGATGATGAAGCTGATGTCCCAGACCTTGGTAAGGAGCAAAAGTGTGATGATGTCCATAATGGTAATGAACAGTTGTATGATGGAGCTTCTGTCCCAGAACCTGGAAAGGTACAAAGGTGTGATGAAGAACCTGGAGAGGAACAAAGGTGTGATGATGGTGATGCTAATGTAAAATTGTATGATGAAGCTGCCATCCCAGAACCGGGTAAGGAACAAAGCTGTGATGATGATGGTGCTAATCAACAATTGTATGATGAAGCTGCTGTCGCAGAATCTGGTAAGGAACAAAGGTGCGATGATGATGGTGCTAATCAACAATTGTATGATGAAGCTGCTGTCCCAGATCCTGGTATGGACCAATGGTATAATGATTATTATGATGGTTGGAATGGTGGTGATGAGGGCTATAATTGGATTGAGAATGCGAGTGAGAGTTGGAATAATATGGGGGATGGAGATGTTGTTTATGGAGTGGAGGGTAGTGAAGTGGAGAACAATGATGAAAGAAGCAGTTGTAGAGCTCAACAGTACCCGTTGAGGCCTGATGCTGAAGACTGTGCATTTTATCTTAGGACTGGGACGTGCAAATTTGGATTCAATTGCAGGTTTAATCACCCGGTTAGGCGCAAAAGCAAGGCTGTTAAAGAGGTGGGAGAAAGAGATGACACTGAGGAAAGATCAGGACAGACAGAATGCAAGTATTATCTAAGATCTGGGGGTTGTAAGTTTGGAAAAGCGTGTAAATTCAACCACACTCGAGAAGAGAATTCATCAGCCCCAGATATAGAGCTTAACTTCCTAGGGCTGCCTATTCGCTTGGGAGAAAAAGAGTGCCTCTATTACATGCGCACTGGCTCTTGCAAGTTTGGAGCAAACTGCAAGTTCAATCATCCTGATCCTACAGCTGTTGGAGGATGTGATACCCCTTCAGGGTATAGCACTAATGGAAGCTCTATTTCATTACAAGGTGTATCACAATCATCTATACCCTCCTGGTCTTCTACTAGGACATTAAAGGAAACTTCTCTTGTGCCAATTATACTTTCACAAAATTCTGGGGTTTCTCACCAAAGTTCTGAATGGAGTGGATATCAGGCACCTGGGTATTTATCTGAGAGGAGTATGCATCCTCCTTCAACATATGTCATGAACAACCCAGCTAGTGAAACAACTATTTATATGCATCATCAAAAGAAGATGCCGGCTTATGACTTTCCGGAAAGGCCTGGTGAACCCGGATGCAGCTTCTTCTTAAAAACTGGAGATTGCAAGTTCAAATCTAATTGTAAATTTCACCACCCAAAGAATAGGATTACAAGAGTACCTCCATGCAGCCTCAGTGACAAGGGTCTGCCTCTAAGACCAGACCAGAATGTGTGCTCACAATACAGCAGATATGGAATTTGCAAATTTGGACCAGCTTGCAGGTTTGACCATCCAAGAAACCCACCACCGTCAACTATGCCTGTACTTGATCAACAGTCATCCTTCAGTGGAAGTGGTGGTGCCAGTGATGTGATAATTCAGCAGCATATGTAA 2157 0.4363 MGSSNSSHPQFTPIPHHDHDPQPSDLNHLAQVHDDALAGDLHNKLDFKDGDDETQNKGSNFEPGHGQLYDEAAVPEPVKEQRSDDGADSNEQLHDEAAVPEPDKEQKCDADDEQLNYEAAVPEPGKEQRCDDDDGLGNQQLNDEAAVQEPCKEQKCDDVHDGDEQLYDEAAVPEPCKEQKCDDVHDGNEQLYDGAAVPEPAKEQRCDDEADVPDLGKEQKCDDVHNGNEQLYDGASVPEPGKVQRCDEEPGEEQRCDDGDANVKLYDEAAIPEPGKEQSCDDDGANQQLYDEAAVAESGKEQRCDDDGANQQLYDEAAVPDPGMDQWYNDYYDGWNGGDEGYNWIENASESWNNMGDGDVVYGVEGSEVENNDERSSCRAQQYPLRPDAEDCAFYLRTGTCKFGFNCRFNHPVRRKSKAVKEVGERDDTEERSGQTECKYYLRSGGCKFGKACKFNHTREENSSAPDIELNFLGLPIRLGEKECLYYMRTGSCKFGANCKFNHPDPTAVGGCDTPSGYSTNGSSISLQGVSQSSIPSWSSTRTLKETSLVPIILSQNSGVSHQSSEWSGYQAPGYLSERSMHPPSTYVMNNPASETTIYMHHQKKMPAYDFPERPGEPGCSFFLKTGDCKFKSNCKFHHPKNRITRVPPCSLSDKGLPLRPDQNVCSQYSRYGICKFGPACRFDHPRNPPPSTMPVLDQQSSFSGSGGASDVIIQQHM* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5283 718 MobiDBLite consensus disorder prediction 35 58 - -
Lja1g5283 718 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 4 709 - -
Lja1g5283 718 Gene3D - 659 707 - -
Lja1g5283 718 ProSiteProfiles Zinc finger C3H1-type profile. 432 460 IPR000571 GO:0046872
Lja1g5283 718 MobiDBLite consensus disorder prediction 148 164 - -
Lja1g5283 718 ProSiteProfiles Zinc finger C3H1-type profile. 386 414 IPR000571 GO:0046872
Lja1g5283 718 SUPERFAMILY CCCH zinc finger 479 505 IPR036855 GO:0046872
Lja1g5283 718 MobiDBLite consensus disorder prediction 242 261 - -
Lja1g5283 718 ProSiteProfiles Zinc finger C3H1-type profile. 478 506 IPR000571 GO:0046872
Lja1g5283 718 SUPERFAMILY CCCH zinc finger 619 644 IPR036855 GO:0046872
Lja1g5283 718 MobiDBLite consensus disorder prediction 200 227 - -
Lja1g5283 718 ProSiteProfiles Zinc finger C3H1-type profile. 660 688 IPR000571 GO:0046872
Lja1g5283 718 SUPERFAMILY CCCH zinc finger 658 685 IPR036855 GO:0046872
Lja1g5283 718 MobiDBLite consensus disorder prediction 75 114 - -
Lja1g5283 718 MobiDBLite consensus disorder prediction 1 164 - -
Lja1g5283 718 Gene3D - 423 508 - -
Lja1g5283 718 ProSiteProfiles Zinc finger C3H1-type profile. 614 642 IPR000571 GO:0046872
Lja1g5283 718 SUPERFAMILY CCCH zinc finger 436 462 IPR036855 GO:0046872
Lja1g5283 718 SMART c3hfinal6 386 413 IPR000571 GO:0046872
Lja1g5283 718 SMART c3hfinal6 660 687 IPR000571 GO:0046872
Lja1g5283 718 SMART c3hfinal6 614 641 IPR000571 GO:0046872
Lja1g5283 718 SMART c3hfinal6 478 505 IPR000571 GO:0046872
Lja1g5283 718 SMART c3hfinal6 432 459 IPR000571 GO:0046872
Lja1g5283 718 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 663 687 IPR000571 GO:0046872
Lja1g5283 718 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 618 641 IPR000571 GO:0046872
Lja1g5283 718 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 390 412 IPR000571 GO:0046872
Lja1g5283 718 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 481 504 IPR000571 GO:0046872
Lja1g5283 718 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 435 457 IPR000571 GO:0046872
Lja1g5283 718 SUPERFAMILY CCCH zinc finger 387 414 IPR036855 GO:0046872
Lja1g5283 718 MobiDBLite consensus disorder prediction 178 261 - -
Lja1g5283 718 Gene3D - 570 648 - -
Lja1g5283 718 Gene3D - 347 422 - -
Lja1g5283 718 PANTHER PROTEIN PHOSPHATASE RELATED 4 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5283 Lja-Chr1 80724022 80731437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5283 610 701 C2H2 Transcription Factor Family AT3G02830 46.237 2.02e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g5283 zf-CCCH 1.2e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5283 1 80724022 80731437 Lja4g2366 4 26504797 26509350 ECH
Lja1g5283 1 80724022 80731437 Lja1g5283 1 80724022 80731437 ECH
Lja4g2366 4 26504797 26509350 Lja1g5283 1 80724022 80731437 PCT