Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5276 ATGAAATGGGTTCTATTGCAAGAGCCTGCAAAACCAAAGAGACCCCACAATGTGAAGAGGCTAGCAAGTGCAGGACTGAAAGCAGACTCGGTTCTGATGCGAAAAACGGGTAACCTGAAGGAGTCTTACAATTTGGGGCAGAAGCTAGGACAAGGGCAATTCGGAACCACTTTCCTTTGTTCGGAGAAAGCCACTGGGAAAGAGTATGCTTGCAAATCAATTGCAAAGAGGAAACTGCTGACAGAGGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCACCACCTTGCTGGGAGCCCCAATGTGATCTCCATTAAGGAGGCTTATGAGGATGCTGTGGCTGTTCATGTTGTGATGGAGTTGTGTGCAGGGGGTGAGCTGTTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGGAAAGCAGCTAGGCTTGCAAGGACTATTGTAGGTGTTATTGAGTCTTGCCACTCCCTCGGAGTAATGCATCGCGATCTTAAGCCGGAGAACTTTCTTTTCGTCAATGAGCAGGAAGACTCACCCCTAAAGGCAATAGATTTTGGACTGTCTGCTTTTTTCAAACCAGGTGAAATTTTCAATGATGTGGTAGGAAGTCCTTATTATGTTGCCCCTGAAGTTCTACGCAAGCGTTATGGCCCAGAAGCAGATGTGTGGAGTGCTGGTGTTATTGTATACATTCTCTTATGTGGGGTTCCTCCATTTTGGGGTGAATCGGAACAAGATATATTTGAGGCGATTTTGCATGGTGATCTTGATTTCACGTCAGATCCCTGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTATGAAGATGCTTGTCAGAGATCCTAGAAAACGATTAACAGCATATGACGTTCTTCGCCATCCCTGGATTCAGGTTGATGGAGCAGCACCAGATAAGCCTCTTGATTCAGCAGTTTTAAGTCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTGCTGGATTGAAAGAAATATTTAAGATGATAGACACAGATAATAGTGGTCAAATTACCTTTGAAGAACTCAAGATTGGGCTGAAAAAGTTTGGCGCTAATCTCAATGAATCTGAAATTTACGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACGTTGCATCTAAACAAAGTTGAGAGAGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGACGGAAGCGCTTGTGAAGAATTTGGCCTTGGCGATGTCCGTTTAGAGGAAATGATCCGAGAAGCTGATCAAGATAATTTTTGTTCAGAAAAATATGAAAATTATTGTTGGCAATTCGGAACCACTTTCCTTTGTTCGGAGAAAGCCACTGGGAAAGAGTATGCTTGCAAATCAATTGCAAAGAGGAAACTGCTGACAGAGGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCACCACCTTGCTGGGAGCCCCAATGTGATCTCCATTAAGGAGGCTTATGAGGATGCTGTGGCTGTTCATGTTGTGATGGAGTTGTGTGCAGGGGGTGAGCTGTTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGGAAAGCAGCTAGGCTTGCAAGGACTATTGTAGGTGTTATTGAGTCTTGCCACTCCCTCGGAGTAATGCATCGCGATCTTAAGCCGGAGAACTTTCTTTTCGTCAATGAGCAGGAAGACTCACCCCTAAAGGCAATAGATTTTGGACTGTCTGCTTTTTTCAAACCAGGTGAAATTTTCAATGATGTGGTAGGAAGTCCTTATTATGTTGCCCCTGAAGTTCTACGCAAGCGTTATGGCCCAGAAGCAGATGTGTGGAGTGCTGGTGTTATTGTATACATTCTCTTATGTGGGGTTCCTCCATTTTGGGGTGAATCGGAACAAGATATATTTGAGGCGATTTTGCATGGTGATCTTGATTTCACGTCAGATCCCTGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTATGAAGATGCTTGTCAGAGATCCTAGAAAACGATTAACAGCATATGACGTTCTTCGCCATCCCTGGATTCAGGTTGATGGAGCAGCACCAGATAAGCCTCTTGATTCAGCAGTTTTAAGTCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTGCTGGATTGAAAGAAATATTTAAGATGATAGACACAGATAATAGTGGTCAAATTACCTTTGAAGAACTCAAGATTGGGCTGAAAAAGTTTGGCGCTAATCTCAATGAATCTGAAATTTACGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACGTTGCATCTAAACAAAGTTGAGAGAGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGACGGAAGCGGCTATATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCCTTGGCGATGTCCGTTTAGAGGAAATGATCCGAGAAGCTGATCAAGATAATGATGGAAGAATAGACTACAATGAATTTGTAGCTATGATGCAGAGAGGCAATGCAGATTTGGGTAAGAAGGGTCGAAAGGGTAGCAGTAGTTTTAGCATTGGATTTAGAGAGGCACTACCAGTGTGTTAA 2772 0.4268 MKWVLLQEPAKPKRPHNVKRLASAGLKADSVLMRKTGNLKESYNLGQKLGQGQFGTTFLCSEKATGKEYACKSIAKRKLLTEEDVEDVRREIQIMHHLAGSPNVISIKEAYEDAVAVHVVMELCAGGELFDRIVERGHYTERKAARLARTIVGVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIVYILLCGVPPFWGESEQDIFEAILHGDLDFTSDPWPSISESAKDLVMKMLVRDPRKRLTAYDVLRHPWIQVDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEEEIAGLKEIFKMIDTDNSGQITFEELKIGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVEREDHLVAAFSYFDKDGSACEEFGLGDVRLEEMIREADQDNFCSEKYENYCWQFGTTFLCSEKATGKEYACKSIAKRKLLTEEDVEDVRREIQIMHHLAGSPNVISIKEAYEDAVAVHVVMELCAGGELFDRIVERGHYTERKAARLARTIVGVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIVYILLCGVPPFWGESEQDIFEAILHGDLDFTSDPWPSISESAKDLVMKMLVRDPRKRLTAYDVLRHPWIQVDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEEEIAGLKEIFKMIDTDNSGQITFEELKIGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVEREDHLVAAFSYFDKDGSGYITQDELQQACEEFGLGDVRLEEMIREADQDNDGRIDYNEFVAMMQRGNADLGKKGRKGSSSFSIGFREALPVC* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5276 923 SUPERFAMILY Protein kinase-like (PK-like) 41 302 IPR011009 -
Lja1g5276 923 CDD STKc_CAMK 468 715 - -
Lja1g5276 923 ProSiteProfiles EF-hand calcium-binding domain profile. 795 830 IPR002048 GO:0005509
Lja1g5276 923 Pfam Protein kinase domain 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5276 923 Pfam Protein kinase domain 468 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5276 923 ProSiteProfiles Protein kinase domain profile. 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5276 923 SMART efh_1 869 897 IPR002048 GO:0005509
Lja1g5276 923 SMART efh_1 835 863 IPR002048 GO:0005509
Lja1g5276 923 SMART efh_1 763 791 IPR002048 GO:0005509
Lja1g5276 923 SMART efh_1 348 376 IPR002048 GO:0005509
Lja1g5276 923 SMART efh_1 384 412 IPR002048 GO:0005509
Lja1g5276 923 SMART efh_1 799 827 IPR002048 GO:0005509
Lja1g5276 923 ProSitePatterns Protein kinases ATP-binding region signature. 49 76 IPR017441 GO:0005524
Lja1g5276 923 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Lja1g5276 923 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Lja1g5276 923 ProSitePatterns EF-hand calcium-binding domain. 878 890 IPR018247 -
Lja1g5276 923 ProSiteProfiles Protein kinase domain profile. 458 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5276 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Lja1g5276 923 Gene3D - 723 899 - -
Lja1g5276 923 Gene3D - 308 463 - -
Lja1g5276 923 CDD STKc_CAMK 43 300 - -
Lja1g5276 923 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 8 456 - -
Lja1g5276 923 Gene3D Phosphorylase Kinase; domain 1 468 543 - -
Lja1g5276 923 Gene3D Phosphorylase Kinase; domain 1 45 128 - -
Lja1g5276 923 ProSitePatterns EF-hand calcium-binding domain. 772 784 IPR018247 -
Lja1g5276 923 ProSiteProfiles EF-hand calcium-binding domain profile. 759 794 IPR002048 GO:0005509
Lja1g5276 923 ProSitePatterns EF-hand calcium-binding domain. 357 369 IPR018247 -
Lja1g5276 923 SUPERFAMILY EF-hand 330 456 IPR011992 -
Lja1g5276 923 PANTHER SERINE/THREONINE-PROTEIN KINASE 468 905 - -
Lja1g5276 923 SUPERFAMILY Protein kinase-like (PK-like) 469 717 IPR011009 -
Lja1g5276 923 ProSiteProfiles EF-hand calcium-binding domain profile. 869 900 IPR002048 GO:0005509
Lja1g5276 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Lja1g5276 923 ProSitePatterns EF-hand calcium-binding domain. 808 820 IPR018247 -
Lja1g5276 923 Pfam EF-hand domain pair 836 895 IPR002048 GO:0005509
Lja1g5276 923 Pfam EF-hand domain pair 764 824 IPR002048 GO:0005509
Lja1g5276 923 Pfam EF-hand domain pair 349 409 IPR002048 GO:0005509
Lja1g5276 923 CDD EFh 835 895 IPR002048 GO:0005509
Lja1g5276 923 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Lja1g5276 923 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 468 905 - -
Lja1g5276 923 CDD EFh 349 408 IPR002048 GO:0005509
Lja1g5276 923 ProSitePatterns EF-hand calcium-binding domain. 844 856 IPR018247 -
Lja1g5276 923 Gene3D Transferase(Phosphotransferase) domain 1 129 307 - -
Lja1g5276 923 Gene3D Transferase(Phosphotransferase) domain 1 544 722 - -
Lja1g5276 923 SMART serkin_6 468 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5276 923 SMART serkin_6 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5276 923 SUPERFAMILY EF-hand 755 896 IPR011992 -
Lja1g5276 923 ProSiteProfiles EF-hand calcium-binding domain profile. 831 866 IPR002048 GO:0005509
Lja1g5276 923 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5276 Lja-Chr1 80549843 80576045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5276 468 917 EF-hand Containing Proteins AT5G04870 82.444 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g5276 Pkinase 2.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5276 K13412 - gmx:100800415 851.662