Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5272 ATGTTTTCCTTAAGATCTGATCCCTGTCCAGAGTGGATCTACGATGTCCTTTTGAGTTATTGTGTTAATGATGACTCTGCTAAATCTTTTGCATCACTTCTCTACACCACTCTCACAGAGGCTGGAGTTGATGTTTTCAAGGACGATGGCAAGCTTAGAAGTGGCGATCAGATATCATATTTCTCCTCAGTGCTTCATGCAATCGGAGTTTCTAGAATTTCCATCATTGTTTTCTCAAGAAACTATGCTGCATCTCAATGGTGTATGGAAGAGTTGGAAAAAATAATGGAGTGCCGCAGAACCATATCTCAGAGGGTAATCCCTGTATTCTATGAAGTAGATCCCTCTGATGTATTTATGCAAGAAGGTGCGTTTGGAGAAGGTTTTGAAGACAAATTGATAAGTTGGAGGGCAGCTCTCAGTGAAGCTAACAACATATTAGGACTTCACTCAGTGGATTCAAGGAGGGAACACGACGAGATCAACAAAGTAGTTGAAGATGTTATGGAAGATGTTAAGGCAGACTTGCTAGCCTTCAGACAATCGAAGGATCTAGTGGGGATAGAATCTCGTGTGCAAGATGTGGTTCGACTGCTGAACAGCCAACAATCACAACATCCACAAATACTAGGGATATGGGGTATGGCAGGGATAGGTAAAACAACCATTGCCAAAGAAGTTTTTTCTCGAATTGGTCATGGTTTTGAGGCTCTTGTATTCCTTAATAATGTCAGGGAATGCACACTAGAACATGGGTTGCTTTCTTTACAGCATAAGCTTCTTTCTACAATCTTCGAAACAGAAGAACTACAGCTACATTCAATTGAATCAGCAAAAAAGATACTGCGGGAAAGACTTCATGATAGAAAAATACTTGTTATACTTGATGACGTGAATGAGCCAGAGCAGCTAAATGCTCTGTGTGGAAGTCGTGACTGGTTTAGTTCGGGCAGTGTTATAATCGTCACCACAAGAGATAGGCGTCTACTCAAGACGCTTGGAGTTGACCATGTGTATAGAGTGCCAGAGCTGGACCAAATTGAGTCTCTTGAGCTTTTTTGTTGGCGTGCATTCAGCCAAGCAAGTCCTGGAGAAGATTTTGTTGAACTTTCCAGAAAAGTAGTTGCTTACTCTGGGGGATTGCCACTAGCTCTTAAAGTCACTGGGCGCACTGTGTTTGGAAGTGACGCATCAGAGTGGAAGAGTCTGTTACCCAAACTCAAAAGAGATCTCGATCACAAACTTTACCGAGTTCTAAAAAGTTGTTTTGATGATTTAGACGAGACAGCTAAAGTAGTAGGCCTTGATATAGCATGTTTCTATAGCGGGATGGACCGAAATGAAGTGATACAGATGTATGCATTTTCAGCAGAAGTTGCATTACAAGTTCTTCAAGACCAAAGCCTTTTAATTATTAATGAGAATAACAAGCTCAGAATGCACGTTCTGCTGCAACATGCGGGAAGAGAATTCCAAAAGGAGAAGGTGTTGCAGAAGGTTGCTCTGGGAAAAATCTACGACGTGTTCTTGAGTTTCAGAGGGAAAGACAGTCGCCCAAAATTCGTTTCACATCTCCATACCTCTCTCGAAAATGCTGGAATATATGTTTTCAGAGATGATGATGAAATTCGGCGGGGAGATACGATCTCAGACTCATTACTGCGAAGTCTCAGACAATCTAGAATTTGTATTGTTGTTCTGTCAAAACATTATGCTAATTCAAAATGGTGCATGCTAGAGTTGGAGAACATAATGGAATATCGCCAAACCATGGGTCTGGTGGTTGTGCCAGTGTTCTACGAGGTAGATCCCTCAGATGTACGTCATCAAGCAGGTGAGTTTGGAAAAGCTTTTGAGGATCTTATAACAAGAACCTCACTGGATGAAGAAGACGACACTGTGCAAAATTGTAGGACAGCACTCCTTCAAGTTGGTGGCATAGCAGGTGTTGTCATCATAAATTCCAGGAACGAAAGTGAGGATGTCAAGAAAGTAGTTGAAGATGTTACTGGTTTGCTTGGCAAGACAGACTTATTCGTTGCTGAGCACCCAGTGGGGGTAGAAGCTCGTGTTCAAGATGTGATTCAACTTTTGCATAGTCATCAATCCAAAGCTCCTTTGCTACTTGGGATATGGGGGATGGGGGGGCTGGGCAAAACAACCATTGTAAAAGCTGTTTATAATCAAATTCGTCGTGATTTTGAGGCTAAGAGCTTCCTCCTAAATGTCAGAGAAGTTTGCGAACAAAATAATGGTATAGTTTCTTTACAACAGAAGCTTCTTTCTGATATCTACAAAACAACCAAGATAAAGATAGATAATGTTGAATCAGGAAGAGTGGAATTGAAGAGAAGACTTAGCCAGAAGAAAATATTTCTTGTGCTTGATGATGTCAATAGATTGGACCAACTGGCTTCTTTGTGTGGAAGTTGTGAATGGTTTGGCCAAGGAAGTAGAATTATCATCACAACCAGAGATGAAAATATAGTCAGCAGGGCATTTGGAGTTGAGCTTGTATATAGAATAAAAGAAATGGATGAGAAGGAATCTCTTGAGCTTTTTAGTTGGCATGCATTTAAACAACCAATTCCTGGAGAAGGCTATGCTGACCTTTCAAGAGATGTAGTTGAGTACTGTGGGGGATTGCCGCTAGCTCTTCAAGTAATCGGGTCCTTTTTGTTGACTAGGAGGAGGACTACAGAGTGGAAGAATGTGCTGGAGAAACTCAAAGTGATTCCCAATGGTGAAGTAATGGAGAAGCTAAAAATAAGTTTTGATGGTTTAAGTGATGATGATATTAAAGAAATATTCCTTCACTTAGCTTTTTTCTTTATCGGGATGGACCAACATGATGTAATTAAGATATTGAAAGACTGCGAGCATTTTGCAGAAATTGGAATAAGTGTGCTTGTACAACAAAGCCTTGTAACTATTGATAGGAAGAACAGGATCGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCGTCCGCAAGAAATCAGTAGATGGGGGCAAGGAGCCTAGTAGATTATGGCATTACCAGGATCTGGATTTTGTATTATCAAAAGATACTAGAAAGACAGATGTTCAGGGACTGACTTTGAAGTCTCCAGAAATGGATACAACTTATAACTTCGAAGCCAAAGCATTTGAGAAGATGGATAAACTTAGATTGCTTCAACTTGCTGGCGTGAAAATTGATGGAGATTACAAGTATCTTTCAAAAGATCTTAGATGGCTTTGCTGGCATAGATTTCCTTTAAAATACACACCAACAGACTTTCATCAACAAAGTTTAGTTGCCATTGACTTCAAATATTCCAATCTGGAACAAGTTTGGAAGAAGTCCCAGTTGCTGAAGAAGCTGAAATTTCTGAATCTTAGTCATTCTCCTAACTTGAGACAAACTCCAGACTTTTCAAACTTACCAAATCTTGAAAAGTTAGTACTTAAAGACTGTTCTAGTTTGTCTTCGATTTCTCATACTATTGGAAATCTCAATGAACTGGTTCTGCTAAATTTGAAGAACTGTACAAGCCTTCATTCACTTCCAAAAAGCATCTATAAGTTGAAGTCATTAAAAACTCTTATTTTGTCTGGATGTTCAAAAATTGACAAGTTGGAAGAGGATATAGAACAGATGGAATCTTTAACCATCCTGGTTGCAGATAACACTGCAATAACAAGAGTTCCCTTTGCTGTAGTGAGATCCAAAAGCATTGGATATATTTCTTTGTGCGGCTATGAAGGATTCTCACGTGATGTATTTCCATCAATTATACGATCTTGGATGTCTCCAACTAATAATATTTTATTCCAAGTTCAAACATCTTCTATGGGCATGTCATCCCTTGATATCTTGTATGAACAAAACAGTAGTTCATCAGGTCTATTCTATGCTCTAAAGGATCTTCAGAAGCTTCGACGCCTTTGGGTGAAGTGCGACTCAGAAGTTCAGCTGAATGAATGTGTAGAAAGAATTTTGGATGCACTAAAAATCACAAATTGTGCGGAATTAGAAGCAACACCAAGCACATCTCAAGTCTCAAACAATAGTTCTGCTTTACTTGATTGTCACAATCAAGTTCGCATTTCAGGGTCAAAACTTTCGTCGACTTCTCTTCTGATACAAATGGGAATGAACTGCCGTGTCTTCAATACTCTTAAAGAAACTATTTTACAGATGTCCCCCATTGAGTCTGGTTTACTTCCCAGTGACGACTATCCTGATTGGTTAACATTCAATAGTGATTGTTCTTCTGTAACTTTTGAAGTCCCTCAAGTGGATGGGCGCAACTTGAGGACAATCATGTTCATTGTCTATTCTTCTTCCCCAGACAATATCACATCAGAAGGCCTGAAAAATGTGTTGATGATAAATTGCACAAAGAACACCATTCAGCTCTATAAGAAAGGTGCATTAGGATCCTTTAATGAAGAGGAGTGGCAGAAAGTAGTATCAAACATAGAACCTGGTAACAAAGTGAAGGTGGTTGTCTTTTTTGAGAAAGAATTCATTGTGAAGAAGACATCAGTTTATCTCATATATGATGTGCCAACTGACCAAAAGACAGAACACTGCCATGAGCCAGATAAGAGTGTTCCTGTTTCCGGTGGTGATGAAAATGACTTTTCTCAACCTGAAGGTAGCAACGCTGATCCACCTCCTTGCTTAAAGAAAAAGAAAATCAAGCATAAGGATACTCAAAAACCAATTCCTAATGACATTGTTGAGAAATTTCCAGAGATACCTGGAGGTGAAGCTGTATATGTTTATAGAGAGGCTGATCGAAACGTTCCCCCAGGTCCAAATTTTTCTTTAAACTCTGAACCTTATGATTTTGTCAATTATGAACCAGTCACATTAACTCCTAAAATTCCTGTAGAAACTCAAGGTCCTCAAATTCCTCCTTCTGGTATTCCCACTCGAACCAACATAGAAGTTCCTTCTCCTCCAATAGAAAATCCACTCAAAGAAGCTGCTGTTTCTGAAAATGAGCCTCTTCAGAATCCATTTCCAAAGATTGTTAATCCTTCAGGTCCAACTTCTGAAGCTCAAATTCTTGATACTTTGAATGAACCAACTGTTCAACAACAAGAATCTCCTCCATGTCCCTCTTTAAACATAAAAGATTATGAAAAGATGCTTGAAGATGACCCCTTTCAACTTATGATGAAAATCATTTCGAAAGAGATTCATTTCTCTGACACTAAACAAATTAGCACCAAGACTTCTGAGTCTTCAACATCTACTCCTCTTCCCATGTTGATCAACCAACTGAAGGAGCTTATATTTTCAGTGGACTTAATCGAAGCATTACCGTCGAACACCTTTCTGAGCAATCAAATTCGGAAGGTAATGGATGAGATTGAGGTTCATCAAGATAAACTCAAAGCTTACCGAGATATAGGAGTTGGAAATTTCTGTTATTGGTACAATGATCTTACTTCAACCATAGATCAAATAAAAAATTCAAAACTCTTTATATTCCAACTTGAAGCTGATCAGGAGGAAATTAGACAAAAGTTAATGAAAACTCGAAGCAAGTATGATGGTGCTATTGCTGCAGTTTTGATGGGGGCTTCGAGACGTTGTGAAATCAAGAATGAAATTCAATCACTCAAGCAACAAATTTCTGAGCTTGAGAAGGAAGATGCTTTGATTATTGAGGAAGAACTTAAATGTGAGGATCAAAAGAGAAACATCATTGAGGAAATCAAAGTCTTATCTAAAGAGGCTCTTGAGAAAGGTAAAGAAACTGCTGCCCTCCAGAAAAAGAAGAAGAAGCATGAATCTGTACTTGAAGCTCTTCGAAAGACTTATGAAGAGATGAAGTTCAAGCAAACTTTTTAG 5859 0.3907 MFSLRSDPCPEWIYDVLLSYCVNDDSAKSFASLLYTTLTEAGVDVFKDDGKLRSGDQISYFSSVLHAIGVSRISIIVFSRNYAASQWCMEELEKIMECRRTISQRVIPVFYEVDPSDVFMQEGAFGEGFEDKLISWRAALSEANNILGLHSVDSRREHDEINKVVEDVMEDVKADLLAFRQSKDLVGIESRVQDVVRLLNSQQSQHPQILGIWGMAGIGKTTIAKEVFSRIGHGFEALVFLNNVRECTLEHGLLSLQHKLLSTIFETEELQLHSIESAKKILRERLHDRKILVILDDVNEPEQLNALCGSRDWFSSGSVIIVTTRDRRLLKTLGVDHVYRVPELDQIESLELFCWRAFSQASPGEDFVELSRKVVAYSGGLPLALKVTGRTVFGSDASEWKSLLPKLKRDLDHKLYRVLKSCFDDLDETAKVVGLDIACFYSGMDRNEVIQMYAFSAEVALQVLQDQSLLIINENNKLRMHVLLQHAGREFQKEKVLQKVALGKIYDVFLSFRGKDSRPKFVSHLHTSLENAGIYVFRDDDEIRRGDTISDSLLRSLRQSRICIVVLSKHYANSKWCMLELENIMEYRQTMGLVVVPVFYEVDPSDVRHQAGEFGKAFEDLITRTSLDEEDDTVQNCRTALLQVGGIAGVVIINSRNESEDVKKVVEDVTGLLGKTDLFVAEHPVGVEARVQDVIQLLHSHQSKAPLLLGIWGMGGLGKTTIVKAVYNQIRRDFEAKSFLLNVREVCEQNNGIVSLQQKLLSDIYKTTKIKIDNVESGRVELKRRLSQKKIFLVLDDVNRLDQLASLCGSCEWFGQGSRIIITTRDENIVSRAFGVELVYRIKEMDEKESLELFSWHAFKQPIPGEGYADLSRDVVEYCGGLPLALQVIGSFLLTRRRTTEWKNVLEKLKVIPNGEVMEKLKISFDGLSDDDIKEIFLHLAFFFIGMDQHDVIKILKDCEHFAEIGISVLVQQSLVTIDRKNRIGMHDLLRDMGREIVRKKSVDGGKEPSRLWHYQDLDFVLSKDTRKTDVQGLTLKSPEMDTTYNFEAKAFEKMDKLRLLQLAGVKIDGDYKYLSKDLRWLCWHRFPLKYTPTDFHQQSLVAIDFKYSNLEQVWKKSQLLKKLKFLNLSHSPNLRQTPDFSNLPNLEKLVLKDCSSLSSISHTIGNLNELVLLNLKNCTSLHSLPKSIYKLKSLKTLILSGCSKIDKLEEDIEQMESLTILVADNTAITRVPFAVVRSKSIGYISLCGYEGFSRDVFPSIIRSWMSPTNNILFQVQTSSMGMSSLDILYEQNSSSSGLFYALKDLQKLRRLWVKCDSEVQLNECVERILDALKITNCAELEATPSTSQVSNNSSALLDCHNQVRISGSKLSSTSLLIQMGMNCRVFNTLKETILQMSPIESGLLPSDDYPDWLTFNSDCSSVTFEVPQVDGRNLRTIMFIVYSSSPDNITSEGLKNVLMINCTKNTIQLYKKGALGSFNEEEWQKVVSNIEPGNKVKVVVFFEKEFIVKKTSVYLIYDVPTDQKTEHCHEPDKSVPVSGGDENDFSQPEGSNADPPPCLKKKKIKHKDTQKPIPNDIVEKFPEIPGGEAVYVYREADRNVPPGPNFSLNSEPYDFVNYEPVTLTPKIPVETQGPQIPPSGIPTRTNIEVPSPPIENPLKEAAVSENEPLQNPFPKIVNPSGPTSEAQILDTLNEPTVQQQESPPCPSLNIKDYEKMLEDDPFQLMMKIISKEIHFSDTKQISTKTSESSTSTPLPMLINQLKELIFSVDLIEALPSNTFLSNQIRKVMDEIEVHQDKLKAYRDIGVGNFCYWYNDLTSTIDQIKNSKLFIFQLEADQEEIRQKLMKTRSKYDGAIAAVLMGASRRCEIKNEIQSLKQQISELEKEDALIIEEELKCEDQKRNIIEEIKVLSKEALEKGKETAALQKKKKKHESVLEALRKTYEEMKFKQTF* 1953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5272 1952 Gene3D - 9 173 IPR035897 -
Lja1g5272 1952 Gene3D - 503 679 IPR035897 -
Lja1g5272 1952 PRINTS Disease resistance protein signature 879 893 - -
Lja1g5272 1952 PRINTS Disease resistance protein signature 785 799 - -
Lja1g5272 1952 PRINTS Disease resistance protein signature 1190 1206 - -
Lja1g5272 1952 PRINTS Disease resistance protein signature 708 723 - -
Lja1g5272 1952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 490 IPR044974 GO:0006952
Lja1g5272 1952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 514 1518 IPR044974 GO:0006952
Lja1g5272 1952 Pfam TIR domain 506 669 IPR000157 GO:0007165
Lja1g5272 1952 Pfam TIR domain 22 183 IPR000157 GO:0007165
Lja1g5272 1952 Coils Coil 1922 1949 - -
Lja1g5272 1952 Coils Coil 1866 1893 - -
Lja1g5272 1952 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 23 490 - -
Lja1g5272 1952 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 514 1518 - -
Lja1g5272 1952 SUPERFAMILY L domain-like 986 1315 - -
Lja1g5272 1952 Gene3D - 174 337 IPR027417 -
Lja1g5272 1952 Gene3D Ribonuclease Inhibitor 1018 1403 IPR032675 -
Lja1g5272 1952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 434 IPR027417 -
Lja1g5272 1952 SUPERFAMILY Toll/Interleukin receptor TIR domain 503 648 IPR035897 -
Lja1g5272 1952 Pfam NB-ARC domain 688 911 IPR002182 GO:0043531
Lja1g5272 1952 Pfam NB-ARC domain 191 411 IPR002182 GO:0043531
Lja1g5272 1952 Gene3D - 680 836 IPR027417 -
Lja1g5272 1952 MobiDBLite consensus disorder prediction 1526 1559 - -
Lja1g5272 1952 ProSiteProfiles TIR domain profile. 504 673 IPR000157 GO:0007165
Lja1g5272 1952 CDD AAA 685 842 - -
Lja1g5272 1952 Coils Coil 1785 1805 - -
Lja1g5272 1952 ProSiteProfiles TIR domain profile. 12 176 IPR000157 GO:0007165
Lja1g5272 1952 SMART AAA_5 206 344 IPR003593 -
Lja1g5272 1952 SMART AAA_5 705 844 IPR003593 -
Lja1g5272 1952 Gene3D - 844 929 IPR042197 -
Lja1g5272 1952 Gene3D - 343 427 IPR042197 -
Lja1g5272 1952 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
Lja1g5272 1952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 940 IPR027417 -
Lja1g5272 1952 SMART till_3 505 647 IPR000157 GO:0007165
Lja1g5272 1952 SMART till_3 13 155 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5272 Lja-Chr1 80262942 80271862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5272 4 495 WRKY Transcription Factor Family AT4G12020 29.681 2.00e-50 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5272 - - lja:Lj0g3v0297389.2 3231.81