Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5260 ATGGCGGCTATAGCGGTGGCGGAGGCCAGAAAGGCACCACGGCCAGGCAAGGGCGGCTTCGAAGCGCACGGTCTGACCGAGGAGGAAGCGCGTGTACGAGCCATCGCCGAGATCGTGAGCTCCATGGTGGACCTCTCACGAAAGGGCCACAACGTCGACCTCAACGCTCTCAAATCCGCCGCGTGCCGCAAGTACGGCCTCGCCCGCGCGCCCAAGCTCGTCGAGATGATCGCCGCCCTCCCCGACTCCGACCGGGACGCCCTCCTTCCTAAGCTCCGAGCCAAGCCCGTCCGAACCGCCTCCGGCATCGCCGTGGTGGCCGTCATGTCTAAGCCTCACCGTTGCCCTCACATCGCCACCACCGGCAATATATGCGTTTACTGCCCCGGTGGTCCTGACTCCGATTTTGAGTACAGTACTCAGTCTTACACCGGTTACGAACCAACTAGCATGCGTGCAATTCGAGCAAGGTATAATCCCTACGTGCAGGCTAGAAGCAGGATTGACCAGCTTAAGCGTTTGGGTCACAGTGTAGACAAGGTTGAGTTCATCTTGATGGGTGGTACTTTCATGTCGCTTCCAGCAGAATACCGTGATTATTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACATCTGCCAATGTAGAAGAGGCAGTGGCATACTCTGAACATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGCCTCGGGCCTCACTTGCGACAGATGCTTTCTTATGGCTGCACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCCCGTGACACTAATAGAGGGCATACTGTAGCTGCAGTAGCTGATTGTTTTTGCTTGGCTAAAGATGCTGGTTTCAAGGTTGTGGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAATTTTTTGAGAGTCCCATGTTTAGAGCAGACGGGCTTAAAATATACCCTACACTGGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCTGAGCAACTTGTGGACATCGTAGCAAGAATCCTTGCAATGGTACCCCCGTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGGAATTTAAGGGAGCTGGCGTTAGCTCGAATGGAAGACCTGGGATTAAAATGCCGTGATGTTCGAACTAGAGAAGCTGGAATCCAGGATATACACCACCAAATTAGGCCAGAAGAGGTGGAACTTGTTCGTCGTGATTATTCGGCAAATGAGGGTTGGGAAACGTTTCTGTCATACGAAGATACACGACAGGATATCCTTGTTGGTTTGTTGCGACTACGAAAATGTGGCCGCAACACTACTTGTCCAGAGCTCACGGGGAGATGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCGGTACCAGTTCATGGGCGGGATGCTGACAAGCTACAACACCAGGGATATGGTACACTTCTCATGGAGGAGGCAGAGCGTATTGCATGTAGAGAACACAGATCAACCAAAATAGCTGTGATTTCAGGGGTAGGGACACGTCATTACTACAGAAAGTTGGGATATGAACTTGAAGGGCCTTACATGGTGAAATGTCTAATGTAA 1692 0.5071 MAAIAVAEARKAPRPGKGGFEAHGLTEEEARVRAIAEIVSSMVDLSRKGHNVDLNALKSAACRKYGLARAPKLVEMIAALPDSDRDALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPAEYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYSANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELTGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKCLM* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5260 563 PIRSF HAT_Elp3 20 563 IPR034687 -
Lja1g5260 563 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Lja1g5260 563 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Lja1g5260 563 Gene3D - 414 562 - -
Lja1g5260 563 SUPERFAMILY Radical SAM enzymes 135 374 - -
Lja1g5260 563 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Lja1g5260 563 PANTHER ELONGATOR COMPLEX PROTEIN 3 2 562 IPR034687 -
Lja1g5260 563 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 562 IPR039661 -
Lja1g5260 563 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Lja1g5260 563 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Lja1g5260 563 CDD Radical_SAM 112 359 - -
Lja1g5260 563 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016407
Lja1g5260 563 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 51 562 IPR034687 -
Lja1g5260 563 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 563 IPR000182 GO:0016407
Lja1g5260 563 SFLD ELP3-like 53 562 IPR034687 -
Lja1g5260 563 SFLD elongater protein-like 53 562 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lja1g5260 Radical_SAM 1e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5260 K07739 - gmx:100818764 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5260 1 79576799 79582396 Lja1g5260 1 79576799 79582396 ECH