Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5246 ATGGCCATCGATCCAAACAGCGGCTTCTGCTCTCAATCCAGAACCTTCCACAGCCTCCGTCCAAACGTCCCTCTCCCTCCGCCGTCTCAGCCTCTCTCCCTCACCAACTACTTCCTCTCCCTCCTCCCCGCCGCCGCAACCGCCACCTCCACCGCCGCACTCATAGACTCCGAAACCGACTGCCACCTCTCGTATTCCGTCCTCCTCCGCCAGATAAAATCCCTCGCTTCCTCCCTCCAATCCCTCACCCCTCTCTCCAAGGGACACGTGGCACTCATCCTCACCCCAACTTCCCTACACGTCCCCGTACTCTATCTCTCACTCCTCTCCCTCGGTGTCACAATCTCACCCGCTAACCCGATCGGTTCCCCCTCCGAGGTGACTCACCAGGTTCAACTCACCAAACCCGCCATCGCCTTCGCTACCTCCGCCACCGCCGCCAAAATCCCCGCCCATGAAATCCCGTTCGGCACCATCCTCCTTGACTCCCCGCAATTCCTCTCCATGCTCGAGTCCGACTCGGAGCCCCGCCGAGTCGAGGTGAGTCAGTCCGAGTTGGCGGCGATTCTGTTCTCCTCCGGCACGACGGGGCGCGTGAAGGGCGTGTTGCTGACCCACGCGAACATGATCGCGTTAATTGGAGGGTTCTGGCACCTGAGGCAGGAGATGGAAGATGACTCGCACCCGGTGTCGCTGTTCACGCTGCCGCTGTTTCACGTGTTCGGGTTCTTCATGCTGGTGAGGGCTTTGGCTGTGGGGGAAACGCTGGTGCTGATGCGGAGGTTCGATCTCGAAGGGATGCTGAGAGCGGTGGAGAAGTACAGGATCACGTACATGCCGGTGTCGCCGCCGCTTGTGGTGGCGCTGGCTAAGTCACCGGTGGTGAAGAGGTACGATCTCAGCTCGCTGCGGTTGCTGGGGAGCGGTGGCGCGCCGCTTGGTAAGGAGGTGGCGGAGAACTTCCAAGCCAGATTTCCTAACGTGGAAATTTTGCAGGGCTATGGTCTGACTGAGAGTGGAGGAGGGGCAGCAAGAATGATAGGGCCTGATGAGGCTAAGCGCCATGGTTCTGTGGGCAGACTAGCGGAAAAAATGGAGGCCAAGATAGTAGACCCTGTAACTGGAGAGGCATTATCTCCTGGCCAGAAAGGGGAGCTGTGGTTACGAGGCCCAACAATCATGAAAGGTTATGTGGGAGATGACAAGGCGACCGCTGAAACATTGGATCCAGAGGGATGGCTAAAGACTGGTGATCTTTGTTATTTTGACTCTGATGGTTACCTATTCATTGTAGATAGGCTGAAGGAATTGATCAAATATAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAACACATACTTCACACCAATCCTGAAATTGCTGATGCTGCAGTAATTCCGTATCCTGATGAAGATGCAGGGCAGATTCCATTGGCCTTTGTTGTGAGAAAGCCTGGAAGCAACATCACTGCAGCTCAGGTCATGGAGTTTGTTGCAAAGCAGGTTGCACCGTACAAGAAAATAAGACGCGTTTCTTTTATCAATTCTATACCAAAATCTCCAGCTGGAAAAATTTTGAGAAGAGAATTAGTTGATCAAGCTCTATCGAGTGGCGCGTCCAAATTGTGA 1629 0.5482 MAIDPNSGFCSQSRTFHSLRPNVPLPPPSQPLSLTNYFLSLLPAAATATSTAALIDSETDCHLSYSVLLRQIKSLASSLQSLTPLSKGHVALILTPTSLHVPVLYLSLLSLGVTISPANPIGSPSEVTHQVQLTKPAIAFATSATAAKIPAHEIPFGTILLDSPQFLSMLESDSEPRRVEVSQSELAAILFSSGTTGRVKGVLLTHANMIALIGGFWHLRQEMEDDSHPVSLFTLPLFHVFGFFMLVRALAVGETLVLMRRFDLEGMLRAVEKYRITYMPVSPPLVVALAKSPVVKRYDLSSLRLLGSGGAPLGKEVAENFQARFPNVEILQGYGLTESGGGAARMIGPDEAKRHGSVGRLAEKMEAKIVDPVTGEALSPGQKGELWLRGPTIMKGYVGDDKATAETLDPEGWLKTGDLCYFDSDGYLFIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVIPYPDEDAGQIPLAFVVRKPGSNITAAQVMEFVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVDQALSSGASKL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5246 542 Gene3D - 436 537 IPR045851 -
Lja1g5246 542 SUPERFAMILY Acetyl-CoA synthetase-like 37 536 - -
Lja1g5246 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 531 - -
Lja1g5246 542 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Lja1g5246 542 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 16 531 - -
Lja1g5246 542 CDD 4CL 54 530 - -
Lja1g5246 542 Pfam AMP-binding enzyme 46 440 IPR000873 -
Lja1g5246 542 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Lja1g5246 542 Gene3D - 20 435 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5246 Lja-Chr1 78883793 78894351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5246 3 542 Monolignol Biosynthesis Gene Families AT5G63380 61.913 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5246 K01904 - gmx:100804044 848.195