Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5244 ATGGGGTTCCATGACATGGTTATGCTACTGTTTTCTGCTTGGTGTGTCTTTTATGTGGGATTTTCCAGTGCTCAGTTGCAATCTTCTCAAACCCAAGTGCTTCTCCAGTTGCAAAAACACTTGGAGTATCCATCACAGTTGGAACCATGGAAAGATCGTTGGACAGATCTTTGCTCTGTATCTTCTTCTCCACAATTGAACCTCACATGCAAGGACAATTTTGTGACAGAGCTCATGATCATTGGTGATAAACCAACAAAAGGTAGGGACTTTCATGGGTTTGCTATACCAAATCAAATGCTATCACAGAGCTTCTCCATGGACTCTCTTGTGGCAACTCTTGCCAGGCTAACTAGCTTGAGAGTTCTTAGTCTTGTTTCTTTGGGAATTTGGGGATCACTACCATCTAGCATTCATAGACTTTATGCACTTGAGCATTTGGATTTGAGTTCTAATTATCTTTATGGATCAATCCCTCCAAAGATTTTCACTATAGGGAACCTTCAAACTCTTAGATTGGGTGATAATTTTTTGAATGGAACCATCCCCACCTTGTTCAATTCATCAAGTAATCTGAAAGTTCTAAGCTTGAAGAATAACAGGTTGACAGGTCAATTTCCATCTTCAATCCTTAGTATCACCACCTTGATTGAAATTGACATGTCAACCAATGAAATATCAGGGAGCTTGCAAGATTTCACTGGCTTGAGAAGCTTGGAGCAGTTAGATTTAAGGGAAAACAGATTGGACTCTGCACTGCCCAAAATGCCCCCAAGGTTGATGGGGATTTTCCTCAGTAGAAACTCCTTCTCAGGTCAAATTCCAAAACATTATGGTCAACTAAAAATGCTTCAGCAGCTTGATGTTTCTTTCAATGCACTCACAGGAACTGCTCCTGCTGAACTTTTTTCCTTACCCAATATCAGTTACTTGAATTTGGCATCCAATATGTTGAGTGGACCACTCCAAAATCACTTGAAATGTAGCAACACACTTAGATTTGTTGACATATCACACAACAGGTTAGTGGGGGTCTTGCCTTCTTCTCTGAGAAATGAATTGGAAAATCGATTTGTTAAGAGCGATGGAAACTGCTTATCTGGGAGTGAGCAGTTGCATCAGCATCCAGTGTCCTATTGCGTTGAGGCTCATGTGAAGAAGAAATCACAGAATTTGGGAATTTTTGTTGGTATTGTTGTGGGAACTCTTGTGATCATAATGGTTCTGGTTCTATGCATTGTTGTTGCTTGTAGAAAGTACTTCACTCGAGGGATGTCCGAGCAGCACCTGTTGCATAAAACAGTTCAAGATAGCTATGCAGTAGGGTTCTCTTCTGATATTATTACAAGTGCAAGGTATGTTTCTGAAACTGCAAAGCTAGGCAAAGAAGATATTCCCGCATGTAGATCATTTTCCTTGGAAGAGCTACTGGAAGCCACAAATAACTTTGACAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAAAGGAAAACTGGAGAACGGGATGCCGGTAGTAATAAGGTGCCTACCTTTGTCAAAAAGGTATTCCATTAGGAACTTCAAGCTGAGGTTGGATTTACTTGCAAAGCTTCGTCATCAGCATTTGGTAGCACTCTTGGGGCACTGCATTGATGGTGTTATGGGAGAGCGTAAAGACTCAAAAGTCTTTCTCATTTATGAATTCGTGTCAAATGGGAATTTCCAGACCTATCTCTCTGGGGATAATTCTGGCAAGGTTTTTAATTGGTCAGAGAGATTGAAAGTTCTAATTAGTATTGCTAGGGCCATCCACTTCCTACACACTGGAATGATACCAGGTTTCTTCAAAAATCGACTCAAGACCAACAATATTTTGCTTAGTGAGAATTGGATGGCAAAGCTCAGTGACTATGGACTGTCCATTATCTCAGAGGAAAATGATGCAAGTGGGGTAAAAGGAGAAAGCCCCAATTCATGGCAAATGAAAACATTAGAGGATGATGTTTATAGCTTTGGATTTATACTACTTGAGGCACTTGTTGGACCTTCAGTTGCTTCTAAAAGAGAAGCATGTTTGCTCAATGCAACGGAATCTTTCAGTAGTCAGGATGGTTGGAAAAAGATTGTGGAGCCAGTTGTGCAAGCTACTTGCAGTCGGGAATCTCTAGTTATTATGATTTCCATAACAAACAAGTGTATTTCTCCAGAGTCCTGTAACCGACCATCCATTGAGGACGTCCTTTGGAACTTGCAGTATGCTTCCCAAGTCCAGGCAACAGCTGATGGGGATCAGAAATAG 2289 0.4072 MGFHDMVMLLFSAWCVFYVGFSSAQLQSSQTQVLLQLQKHLEYPSQLEPWKDRWTDLCSVSSSPQLNLTCKDNFVTELMIIGDKPTKGRDFHGFAIPNQMLSQSFSMDSLVATLARLTSLRVLSLVSLGIWGSLPSSIHRLYALEHLDLSSNYLYGSIPPKIFTIGNLQTLRLGDNFLNGTIPTLFNSSSNLKVLSLKNNRLTGQFPSSILSITTLIEIDMSTNEISGSLQDFTGLRSLEQLDLRENRLDSALPKMPPRLMGIFLSRNSFSGQIPKHYGQLKMLQQLDVSFNALTGTAPAELFSLPNISYLNLASNMLSGPLQNHLKCSNTLRFVDISHNRLVGVLPSSLRNELENRFVKSDGNCLSGSEQLHQHPVSYCVEAHVKKKSQNLGIFVGIVVGTLVIIMVLVLCIVVACRKYFTRGMSEQHLLHKTVQDSYAVGFSSDIITSARYVSETAKLGKEDIPACRSFSLEELLEATNNFDNSTFMGENIYGKLYKGKLENGMPVVIRCLPLSKRYSIRNFKLRLDLLAKLRHQHLVALLGHCIDGVMGERKDSKVFLIYEFVSNGNFQTYLSGDNSGKVFNWSERLKVLISIARAIHFLHTGMIPGFFKNRLKTNNILLSENWMAKLSDYGLSIISEENDASGVKGESPNSWQMKTLEDDVYSFGFILLEALVGPSVASKREACLLNATESFSSQDGWKKIVEPVVQATCSRESLVIMISITNKCISPESCNRPSIEDVLWNLQYASQVQATADGDQK* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5244 762 SUPERFAMILY Protein kinase-like (PK-like) 466 748 IPR011009 -
Lja1g5244 762 Pfam Protein tyrosine and serine/threonine kinase 489 744 IPR001245 GO:0004672|GO:0006468
Lja1g5244 762 PANTHER BNAA09G06560D PROTEIN 4 762 - -
Lja1g5244 762 Gene3D Phosphorylase Kinase; domain 1 447 565 - -
Lja1g5244 762 SUPERFAMILY L domain-like 115 368 - -
Lja1g5244 762 PANTHER OS07G0166700 PROTEIN 4 762 IPR045272 GO:0004714|GO:0006468
Lja1g5244 762 Gene3D Transferase(Phosphotransferase) domain 1 566 761 - -
Lja1g5244 762 SMART LRR_typ_2 236 259 IPR003591 -
Lja1g5244 762 SMART LRR_typ_2 281 305 IPR003591 -
Lja1g5244 762 SMART LRR_typ_2 141 165 IPR003591 -
Lja1g5244 762 Gene3D Ribonuclease Inhibitor 259 392 IPR032675 -
Lja1g5244 762 Gene3D Ribonuclease Inhibitor 27 258 IPR032675 -
Lja1g5244 762 ProSiteProfiles Protein kinase domain profile. 483 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5244 Lja-Chr1 78726034 78732361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5244 9 691 Miscellaneous Gene Families AT5G14210 49.856 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Lja1g5244 PK_Tyr_Ser-Thr 4.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5244 - - gmx:100802978 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5244 1 78726034 78732361 Lja1g5244 1 78726034 78732361 ECH