Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5239 ATGGACAGAAAGAGAAGAACCGAAGGACCTAGTGGTGGTGAAAGCTATGAGGAGGTGAAAAGCCCTTCTAAGAAGAGTGCTTCTACTTCATCAACAATTGAAATTCCCCTCCGCCCGGGAAAGGGTACCCTTGGCACTAAGTGCATTGTGAAGGCTAACCATTTCTTCTTGGACCTTCCTAACAAAGAACTATATCATTATGATGTCACTATTACTCCAGAAGTGACTTCTAATGATGTGAACCGTGCTATCATGAAGCAGCTGGTGAGGCAGTACCGTGACTCTCTGGGAAACAGACTTCCTGCCTATGATGGCAGGAAGAGCCTCTATACAGCAGGGCCATTGCCGTTCACATTAGAAGAGTTTCAAATCAACCTTGTAGAGGATGATGATGATGGCGCACCGAGGAGGGATAATGAGTTCAAAGTGGTGATAAAATTCGCTGCTCAAGCAGATCTTCACCACTTGGGACTCTTTTTGGAAGGAAGGCAAACTGACGCTCCTCAAGAAGCTCTCCAAGTTCTTGACATTGTTCTGCGTGAACTCCCTACTAACAAGTATTGTCCAGTGGGGAGATCATTTTTTTCACCTGATATTGGTAGAACTCAGTCCTTAGGTGACGGATTGGAAAGTTGGCGTGGTTTCTATCAAAGCATTCGTCCCACTCAAATGGGACTGTCACTCAACATTGACATATCATCAACCGCATTTATTGAGGCTTTGCCAGTCAAAGATTTTGTGACTAAATTGCTCAACTGGGATGTCTTACGCTCTCGTAGTCCATTGTCTAATGGTGACCGCGGCAAGATAAAAAAAGCACTTTGTGGTCTCAAAGTGGAAGTAACACATCGTGGAAACATGAGAAGGAAATATCGTGTCTGTGGTCTGACCTCACAGGCTACTGGAGATTTGACATTCCATGTGGATGAGAGGGGAACACTCAAGTCTGTTGTTGACTATTTCTATAAGTCATATGGCTATGAAATTCAACATCCTCACTTGCCTTGTTTGCAAGTGGGCAACACACAGAAGCCTAACTATTTACCAATGGAGGTTTGCAAGATAGTACAAGGCCAACGGCACACAAAACGCCTTAATGAGAAGCAAATTACTAATTTGCTAAAATCCACTTGCCAACATCCTTATGCTAAAGAGTTTGGAATCAAAATCAGTGACAAGCTTGCTCAAGTTGAAGCTCGGGTCCTTCCTCCACCTTGGCTCAAATATCATGATACTGGTAATGAAAAGGAATGTCTTCCTCGAGAAGGCAAATGGAATATGAGGAACAAGAAATTGGCCGAGGGTGGGGCAGTCAACAACTGGTTCTGCATAAACTTTGCAAGGAACATTCAGGATAGATTTGCCCAAAGCTTTTGCTATGAACTCGCCCAAATGTGTAGGACTTCAGGCATGACATTTAATCGTGAGCCGGTGGTTCCTACACGGAGTGCTCCACCCGAACAAGTTGGCAAGGTTCTGAGAGCCCAATATCAAGATGCTAAAAACATAATTCGGGGAAGGGATGTTGATTTGCTCATTGTTATTTTACCGGATAACAATGGCTCTCTTTATGGGGATCTCAAACGCATATGTGAGACCGATCTTGGGCTTGTTTCACAATGTTGTTTGAGTAAGAATGTTCTCAAGAGGAATCGACAACAATACTTGGTCGGGGGAAGAAACACTGTCATTGTTGATGCTCTTTCAAAAAGAATTCCTTTTGTCAGTGACAAGGTTACAATTGTTTTTGGGGCGGATGTCACTCATCCGCACCCTGGAGAGGAATCAAGTCCATCCATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCTGAAATCACCAAGTATGCTGGTTTGGTTTGTGCCCAAACACATAGAGAGGAGATCATTCAAGATCTTTTCAAACAATGGCATGATCCAGTCAAAGGAACATCAACCGGTGGAATGATCAAGGAACTTCTTATATCTTTCTTTAGGGCTACAAATCAACGAAAGCCCGAACGCATCATATTTTACAGGGATGGTGTAAGTGAAGGACAGCATCATCAAGTTTTATTGTTTGAGCTTGATGCTATCCGAAAGGCTTGTGCATCGCTTGAGCCCGAATATCAGCCTCATGTAACTTTTGTTGTGGTTAAGAAGCGCCATCACACTAGGCTCTTTGCTAGGGACCATGATGACAAGAGTTCTGTTGATGCGAGTGGCAATATTTTGCCCGGTACCGTTGTGGACTCCAAAATCTGCCATCCGACGGAGTTCGATTTCTATCTTTGTAGCCATTCTGGCATCCAGGGAACAAGTCGTCCTGCTTATTACCACGTCCTATGGGATGAAAACAATTTCACTGCTGATGCATTGCAAAGCTTTACCTACAACCTGTGCTATACCTATGCAAGGTGCACGCGATCAGTATCTATTGTGCCGCCAGCGTACTATGCACATTTGGCAGCATACCGAGCAAGGTTCTATATGGAACCTGAAGCTTTGGACAGTGGGACCATGACCGGTGATGTTGCTCGTCGTCGCAGAATGGATGGACCAAGTACAAGTACTCCTCCACCTGTTGTTGTGAGGTCATTACCTGCAGTGAAGGAGAATGTTAAGAAAGTGATGTTTTACTGTTAG 2622 0.4424 MDRKRRTEGPSGGESYEEVKSPSKKSASTSSTIEIPLRPGKGTLGTKCIVKANHFFLDLPNKELYHYDVTITPEVTSNDVNRAIMKQLVRQYRDSLGNRLPAYDGRKSLYTAGPLPFTLEEFQINLVEDDDDGAPRRDNEFKVVIKFAAQADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTNKYCPVGRSFFSPDIGRTQSLGDGLESWRGFYQSIRPTQMGLSLNIDISSTAFIEALPVKDFVTKLLNWDVLRSRSPLSNGDRGKIKKALCGLKVEVTHRGNMRRKYRVCGLTSQATGDLTFHVDERGTLKSVVDYFYKSYGYEIQHPHLPCLQVGNTQKPNYLPMEVCKIVQGQRHTKRLNEKQITNLLKSTCQHPYAKEFGIKISDKLAQVEARVLPPPWLKYHDTGNEKECLPREGKWNMRNKKLAEGGAVNNWFCINFARNIQDRFAQSFCYELAQMCRTSGMTFNREPVVPTRSAPPEQVGKVLRAQYQDAKNIIRGRDVDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLSKNVLKRNRQQYLVGGRNTVIVDALSKRIPFVSDKVTIVFGADVTHPHPGEESSPSIAAVVASQDWPEITKYAGLVCAQTHREEIIQDLFKQWHDPVKGTSTGGMIKELLISFFRATNQRKPERIIFYRDGVSEGQHHQVLLFELDAIRKACASLEPEYQPHVTFVVVKKRHHTRLFARDHDDKSSVDASGNILPGTVVDSKICHPTEFDFYLCSHSGIQGTSRPAYYHVLWDENNFTADALQSFTYNLCYTYARCTRSVSIVPPAYYAHLAAYRARFYMEPEALDSGTMTGDVARRRRMDGPSTSTPPPVVVRSLPAVKENVKKVMFYC* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5239 873 CDD PAZ_argonaute_like 240 356 - -
Lja1g5239 873 Pfam PAZ domain 269 374 IPR003100 GO:0005515
Lja1g5239 873 Pfam Argonaute linker 2 domain 366 409 IPR032472 -
Lja1g5239 873 Gene3D - 571 873 IPR036397 GO:0003676
Lja1g5239 873 PANTHER PROTEIN ARGONAUTE 1A 27 872 - -
Lja1g5239 873 CDD Piwi_ago-like 381 823 IPR045246 -
Lja1g5239 873 Pfam Piwi domain 512 823 IPR003165 GO:0003676
Lja1g5239 873 MobiDBLite consensus disorder prediction 1 38 - -
Lja1g5239 873 Pfam Mid domain of argonaute 420 495 IPR032473 -
Lja1g5239 873 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 27 872 - -
Lja1g5239 873 SMART DUF1785_2 188 240 IPR014811 -
Lja1g5239 873 Gene3D - 401 563 - -
Lja1g5239 873 ProSiteProfiles PAZ domain profile. 245 357 IPR003100 GO:0005515
Lja1g5239 873 SMART Piwi_a_2 511 824 IPR003165 GO:0003676
Lja1g5239 873 SUPERFAMILY Ribonuclease H-like 504 824 IPR012337 -
Lja1g5239 873 SUPERFAMILY PAZ domain 49 377 IPR036085 GO:0005515
Lja1g5239 873 Gene3D paz domain 234 361 - -
Lja1g5239 873 ProSiteProfiles Piwi domain profile. 511 824 IPR003165 GO:0003676
Lja1g5239 873 SMART PAZ_2_a_3 250 382 IPR003100 GO:0005515
Lja1g5239 873 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g5239 873 Pfam Argonaute linker 1 domain 189 239 IPR014811 -
Lja1g5239 873 MobiDBLite consensus disorder prediction 22 36 - -
Lja1g5239 873 Pfam N-terminal domain of argonaute 47 179 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5239 Lja-Chr1 78574003 78580227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5239 28 873 Eukaryotic Initiation Factors Gene Family AT1G48410 71.914 0.0 1297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5239 K11593 - gmx:100778754 1316.21