Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5238 ATGGCAGCTTTCACTTCACTCTCCCTCTCTCCTCACACCCTCTATCTCCGCCCCAAACCACCGCCACGCTCCGTTTCCGCTTCCGTTTCAGTCTCCGCTCTCCCTGGTACTGATGGAAAAGCACCGCGCAAAAGAACCAGAAGAGTAGAAGGTCCTCGAAAAAGCATGGAAGACTCTGTTCAGCGCAAGATGGAGCAATTTTATGAAGGGGCCGACGGGCCACCCTTACGTGTTCTTCCTATTGGTGGTTTGGGTGAAATTGGGATGAATTGTATGCTTGTGGGGAACCATGACCGTTATATACTCATCGATGCCGGTGTCATGTTCCCCGACGTCGATGAACTTGGAGTTCAAAAGGTCATACCTGATACGACGTTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCTTTGGATTCCAATACTCCAATTTTTGCATCTTCTTTTACGATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATATTTCTTTCATCTAGACTCAGAGTTTTTAGCACTAGGACAAAGTTTGTTGCTGGGCCATTTGAGGTAGAACCTATCAGAGTGACCCATTCTATTCCTGATTGCTGTGGATTAGTTCTTCGCTGTTCTGATGGCACTATTCTTCACACTGGGGATTGGAAGATTGATGAGACACCACTAGATGGGAATGTTTTTGATCGTGAGGCTTTAGAGGAACTTTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACGAATATACTCTCTCCTGGAAGGACAACCAGTGAATCTTCTGTGGCAGATGCACTGTTGAGACATATTTCAGCTTCCAAAGGAAGGGTCATCACTACCCAGTTTGCATCAAATCTACATCGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACCGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTGAGGACTTATTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGTAGAGGATATCGATGCTTATGCTCCAAAAGATTTGCTAATTGTTACAACAGGCTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTACGGAAGTAGTCATGCTTTCAAACTATCCAAGGAGGATGTTGTTTTATATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGCTAAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAAAAATGAAGGTTTGCACACATCTGGCCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTGCTTGGAAAATCAACTGGCATTCGGCACACGGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGGAATAGAAGAGTCCTTTCTAATGGTTTCATTTCACTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGAACTCTTCCTTGATGAAAGATTAAGAATTGCATTAGATGGCATCATTGTGATTAGCATGGAAATATTTCGCCCTAAAAATTTAGACAATTTCGCTGAAAACACCTTAAAAGGGAAGATAAGAATCACCACAAGATGCTTATGGCTTGATAAAGGGAAGCTGATAGACGCCATCTATAAAGCTGCTCGTGCAGCTCTTTCAAGCTGTCCTGTTAACAGTCCACTCTCTCACTTGGAGAGAACTGTGGCTGAGGTGTTGAGGAAGATGGTAAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTGATGAGATAAATACAAAATTGTCTGGCAAATCCCACGTGGCTCCTGGAACATCGACATTAAGAAAAGCAATCGCTGGACATGGAAAGGAAAATCAGTATACCACCCTGAAAACAAGAGATGATGGCATTGATGTTGAAGGACTGGTACCTGAGGAAGAAACCACTACAAGTGGGGCTGAGGGTGATTTATCTAATTCAGAGGACTCAGATGACTTTTTGAAACCATTCATTGCATCATTTAAGGAGAAGTCAGTCAATGCTAACAATGGTTATGTTTCACGAAATGAGCATAAGTTTAATATTAAGAAAGATGATTCTGAAGACACGAATGAAGCCAAGTCTGAAGAAACTTCTAATTCTGAACCAAATCCTCCAAAATTAGTTAAGAAAAATAAATGGAAAGTTGAGGAAGTTAAACGGCTAATTAGTATGCGAGGGAAACTACGCGACAGATTTCAAGTTGTGAAGGGAAGGATGGCTCTCTGGGAAGAGATATCGCAAAATTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTCTGTGGACATCTTTGGTACTGAAATATGAGGAGATCAAGAATACAGATGGCAATAAAAGTTGGCAGTATCGTGAGGACATGGAAAGGGCAATGTCCAATGAGGAAACACCGGCAACCAAGTGA 2595 0.422 MAAFTSLSLSPHTLYLRPKPPPRSVSASVSVSALPGTDGKAPRKRTRRVEGPRKSMEDSVQRKMEQFYEGADGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDVDELGVQKVIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFLSSRLRVFSTRTKFVAGPFEVEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNILSPGRTTSESSVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLSKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFLDERLRIALDGIIVISMEIFRPKNLDNFAENTLKGKIRITTRCLWLDKGKLIDAIYKAARAALSSCPVNSPLSHLERTVAEVLRKMVRKYSGKRPEVIAIAIENPAAVLADEINTKLSGKSHVAPGTSTLRKAIAGHGKENQYTTLKTRDDGIDVEGLVPEEETTTSGAEGDLSNSEDSDDFLKPFIASFKEKSVNANNGYVSRNEHKFNIKKDDSEDTNEAKSEETSNSEPNPPKLVKKNKWKVEEVKRLISMRGKLRDRFQVVKGRMALWEEISQNLLADGISRSPGQCKSLWTSLVLKYEEIKNTDGNKSWQYREDMERAMSNEETPATK* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5238 864 CDD GT1 772 837 - -
Lja1g5238 864 MobiDBLite consensus disorder prediction 737 756 - -
Lja1g5238 864 Gene3D - 528 634 - -
Lja1g5238 864 Gene3D - 80 492 IPR036866 -
Lja1g5238 864 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 864 - -
Lja1g5238 864 Pfam Myb/SANT-like DNA-binding domain 772 853 IPR044822 -
Lja1g5238 864 SUPERFAMILY Metallo-hydrolase/oxidoreductase 76 490 IPR036866 -
Lja1g5238 864 MobiDBLite consensus disorder prediction 1 60 - -
Lja1g5238 864 Gene3D - 277 427 IPR042173 -
Lja1g5238 864 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 433 470 IPR011108 -
Lja1g5238 864 CDD RNaseJ_MBL-fold 79 490 - -
Lja1g5238 864 PANTHER RIBONUCLEASE J 1 864 - -
Lja1g5238 864 Pfam Beta-lactamase superfamily domain 99 235 IPR001279 -
Lja1g5238 864 SMART Lactamase_B_5a 88 285 IPR001279 -
Lja1g5238 864 Gene3D - 774 835 - -
Lja1g5238 864 MobiDBLite consensus disorder prediction 737 770 - -
Lja1g5238 864 MobiDBLite consensus disorder prediction 40 60 - -
Lja1g5238 864 ProSiteProfiles Myb-like domain profile. 770 830 IPR001005 -
Lja1g5238 864 MobiDBLite consensus disorder prediction 672 709 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5238 773 833 Trihelix Transcription Factor Family AT2G38250 42.623 6.84e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g5238 Lactamase_B_2 1.2e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5238 - - gmx:100783850 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5238 1 78521186 78532010 Lja1g5238 1 78521186 78532010 ECH