Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5235 ATGGTTTCAACGAGACGCAACAGTGGATCTCTCTCCGCTTCCAGCAGCGCCAAGAGGCCTTCTTCTTCCGAAGACAAGCCTCCTTCTTCTCCATCGTCCAAGCGCTCAAAGGCTGACAATGGTGCTGCCGCCTCGGACAAACCGATGCCGCCGCCGCCGGACAATTCCAAGGAATTCTCCACTCCTGACCCCCCTGCCGATCCCGGAGAATGCGGCCCCTCCGATGCTCAGATCGCCTCCGCCGCCGCCGCCGTCGCTTCTGATGTCAAGGCCGAGGCCACGCCGCCGATCGCCGACGGTTCTTCACCGACTGTGGTGGCTGATAAGCCTAGGGCTTCGTTCTCTTCGTGGAGCTTATACCAGAAGCAAAACCCGAATGCCGAGTCTTCAGCTCCATGGTGCAGGCTCTTGTCCCAGTCTGCACAGAATCCAAATGTTGCTGTTTGCACGCCGAACTTTACTATTGGCTCTAGCAGAAATTGCAACTTTCCTTTGAAGGATCATACTATGAGTGGGAATTTATGCAAGATCAAGCATACCCAGCGTGAGGGAAGTGCTGTGGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGCTTGTGAATGGGACACTTGTCAAGAAAAACACCAGCTGCATGCTTAACTCGGGTGATGAAGTGGTGTTTGGTTCGATGGGAAATCATTCTTACATTTTTCAGCAAGTAAACTCTGAGGTTGCAGTCAAAGGTGCAGACGTTCAGAGTGGTGTTGGTAAATTTCTGCAGCTTGAAAGGAGAGCCGGAGACCCTTCTGCTGTGGCTGGTGCTTCTATTTTGGCTTCTCTATCTAGCCTCAAACAGGATCTTACAAGATGGAAGTCTCCATCTCAGACCTCCAGTAAACCTCATCAGGGTACTGATGTTTCTAGTCCTTCTGTTCTCCATGATTATACAGAAACTGAGCTTGATGGTCTGGAAGGCAACTCAGCTCCAAATGTAGGGACTGATAAAGCTGCTGATGTTGGAGCAAGCGACAAGAACTCTCCTATGGATTGCGATCCCGATGATGCGGGCACAGAGGCTGGCAATGTAAACCTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATTCTAGGTGGATCTACTTGTAAACTGAAATTGAGCAAAAGTATATTTAAACAGGTATTGGAAGAAAGAAATGGGACGAGGGATGCGCAAGCTGCATCAACTTCCGGGACATCTGTACGCTGTGCAGTTTTTAAGGAAGATGTTCATGCTGCAATACTGGATGGAAGAGAGTTAGACGTGTCCTTTGACAACTTCCCGTACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGTGAAGTACACCACAGATCTTACAACCATAAACCCTCGTATTCTACTATCTGGACCTGCAGGATCAGACATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATATTTTGGAGCTAAATTGCTCATATTTGATAGCCATTTACTTTTGGGTGGTTTATCTTCTAAAGAAGCTGAACTGCTCAAAGATGGATTGAATGCTGAGAAACCCTGCAGCTTCTCCAAGCAAAGTCCTACAGCTACAGACATTGGTAGGAGCATAGATCCATCAGCTAGTGAGACAGATACACCTAGCTCTTCAAATGCACCTACTCCATGTGGCCTTGAATCTCAGCCTAAGTTGGAAACTGATAATGCACCGTCTACCTCCGGGACCACTAAAACTGGCTTTAAACTAGGTGATAGGGTAAAATATAGCTGTTCATCTTCTGGTGTCTTGTATCAGACATCTTCTCCAAGGGGTCCACCTAATGGAAGTCGGGGGAAGGTTGTCTTGCTTTTTGATGATAATCCATTGTCAAAAGTTGGTGTAAGATTTGACAAACCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGGCAAGGATATTTCTGCAATGTCATTGATCTTCGGTTGGAAAACAGTGGCGTTGAAGAGCTGGACAAAATACTTATTAATACTCTGTTTGAGGTTGTGTTGAGTGAGAGCAGAAATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCCTATTCATTTAAAAGTAAGCTTGAAAAGCTTCCAGACAATGTCGTGGTAATAGGTTCACACACTCAAAGTGACAGTCGAAAGGAAAAGTCACATCCTGGGGGTTTGCTTTTTACGAAGTTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCCGATAGTTTCGGCAGATTGCATGATAGGGGGAAGGATGTCCCAAAGCCAAACAAGACTTTGACTAAGCTTTTCCCAAATAAAGTAACAATTCACATGCCTCAGGATGAGACGCTTTTAGCATCTTGGAAGGATCAACTCGACCGTGATGTCGAGACTCTAAAGATCAAAGGAAATTTGCACCATTTGCGCACGGTTTTGAGCCGTTGTGGGATGGAGTGTGAAGGACTTGATACATTGTGTATTAAGGATCAGACAGTTACAAATGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCATCTCATGCATAATTCTGAAGTTGATCCTGATGCGAAGCTAATGTTGTCATGTGAGAGTATCGAGTATGGACTTGGGATCTTACAATCTATCCAGAATGAGTCAAAGAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAGAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTAATTCCACCTAGCGATATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGAACACATTGAAGGAGTTGGTGATGCTTCCTTTGCAGAGACCTGAGCTTTTTTGCAAAGGGCAATTAACAAAGCCATGCAAGGGTATCCTATTATTTGGTCCACCTGGAACAGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAGGCCAGTGCAAATTTCATTAACATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGCGAAAAATATGTGAAAGCTGTTTTCTCACTAGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGATGAAGTTGATAGCATGCTTGGCCGAAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAACGAATTCATGGTGAACTGGGATGGATTACGTACGAAAGATACTGAGCGTGTTCTTGTTCTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATTAGGAGGCTTCCTCGGAGATTAATGGTAAATTTGCCGGATGCTCCCAACAGAGAGAAAATATTGAAAGTTATACTGGCAAAAGAGGATTTGTCTTCTGATATTGATATGGGTGCAATAGCAAATATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAACAGATATTGGAAAAGGAAAAAAAGGAACAAGCTGCTGCACTCGCAGAAGGAAGGCCTGCTCCAGCATTAAGTGGGAGTGAAGATATCCGACCTTTAAACATGGAAGACTTTAAACAAGCTCATCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTTAATATGACCGAGCTCTTGCAATGGAATGAACTATACGGTGAAGGCGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3726 0.445 MVSTRRNSGSLSASSSAKRPSSSEDKPPSSPSSKRSKADNGAAASDKPMPPPPDNSKEFSTPDPPADPGECGPSDAQIASAAAAVASDVKAEATPPIADGSSPTVVADKPRASFSSWSLYQKQNPNAESSAPWCRLLSQSAQNPNVAVCTPNFTIGSSRNCNFPLKDHTMSGNLCKIKHTQREGSAVAVLESTGSKGSVLVNGTLVKKNTSCMLNSGDEVVFGSMGNHSYIFQQVNSEVAVKGADVQSGVGKFLQLERRAGDPSAVAGASILASLSSLKQDLTRWKSPSQTSSKPHQGTDVSSPSVLHDYTETELDGLEGNSAPNVGTDKAADVGASDKNSPMDCDPDDAGTEAGNVNLSGVNDFLRPFFRILGGSTCKLKLSKSIFKQVLEERNGTRDAQAASTSGTSVRCAVFKEDVHAAILDGRELDVSFDNFPYYLSENTKNVLIAACFIHLKHKEHVKYTTDLTTINPRILLSGPAGSDIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKPCSFSKQSPTATDIGRSIDPSASETDTPSSSNAPTPCGLESQPKLETDNAPSTSGTTKTGFKLGDRVKYSCSSSGVLYQTSSPRGPPNGSRGKVVLLFDDNPLSKVGVRFDKPIPDGVDLGGACEGGQGYFCNVIDLRLENSGVEELDKILINTLFEVVLSESRNAPFILFMKDAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTQSDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKDVPKPNKTLTKLFPNKVTIHMPQDETLLASWKDQLDRDVETLKIKGNLHHLRTVLSRCGMECEGLDTLCIKDQTVTNENAEKIVGWALSHHLMHNSEVDPDAKLMLSCESIEYGLGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKNTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEASANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILKVILAKEDLSSDIDMGAIANMTDGYSGSDLKNLCVTAAHRPIKQILEKEKKEQAAALAEGRPAPALSGSEDIRPLNMEDFKQAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5235 1241 MobiDBLite consensus disorder prediction 532 591 - -
Lja1g5235 1241 ProSitePatterns AAA-protein family signature. 1080 1099 IPR003960 GO:0005524|GO:0016887
Lja1g5235 1241 Pfam AAA+ lid domain 1130 1165 IPR041569 -
Lja1g5235 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1218 IPR027417 -
Lja1g5235 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 80 365 - -
Lja1g5235 1241 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 389 1241 - -
Lja1g5235 1241 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 80 365 - -
Lja1g5235 1241 Gene3D - 935 1216 IPR027417 -
Lja1g5235 1241 MobiDBLite consensus disorder prediction 532 568 - -
Lja1g5235 1241 CDD FHA 153 233 IPR000253 GO:0005515
Lja1g5235 1241 Gene3D - 132 241 - -
Lja1g5235 1241 Gene3D - 1109 1203 - -
Lja1g5235 1241 Pfam ATPase family associated with various cellular activities (AAA) 977 1106 IPR003959 GO:0005524|GO:0016887
Lja1g5235 1241 SMART AAA_5 973 1110 IPR003593 -
Lja1g5235 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 389 1241 - -
Lja1g5235 1241 MobiDBLite consensus disorder prediction 283 352 - -
Lja1g5235 1241 Gene3D - 574 671 - -
Lja1g5235 1241 MobiDBLite consensus disorder prediction 575 590 - -
Lja1g5235 1241 MobiDBLite consensus disorder prediction 1 83 - -
Lja1g5235 1241 CDD AAA 975 1108 - -
Lja1g5235 1241 Pfam FHA domain 154 223 IPR000253 GO:0005515
Lja1g5235 1241 MobiDBLite consensus disorder prediction 283 309 - -
Lja1g5235 1241 SUPERFAMILY SMAD/FHA domain 115 232 IPR008984 GO:0005515
Lja1g5235 1241 Coils Coil 897 917 - -
Lja1g5235 1241 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5235 Lja-Chr1 78422865 78443289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5235 936 1185 Calmodulin-binding Proteins AT3G56690 40.467 3.99e-43 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5235 1 78422865 78443289 Lja1g5235 1 78422865 78443289 ECH