Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5232 ATGGCAAAGTACTATGATATTGATGACATTATGGTGGAGGAAGAGATTGTGTCGGTGATATTTCAGAAGTCGGCATCTGGAGTGGGAATAGATCCAAGTTCTGAGACGGACCTTATTGAAGCAGGCTCAAAAGTTGAATTGCCTTTTTGGCTTGCTCATGAATTACAGTTGAGACAAGCAGTATCAGTAAATGTTCCCCCTTGTTTCAATCAAAAAACAAGGCTAGAGATCCAAGCTGATTCTGCATCTGTGGATCTCAAGTCTAGATGTCCATTCTTTTATGAATTTGGTTGCAAGATAGCACCCATAGTTGGCGACCGGACCATTGGGTTTCTGTTATTATCTGCATTTAAGAGTAGGTACAAGGAAGTCCTCACGAAGGCACATACTGCAGCATTTGCAACTGGCTCCAAATTTTGGACTATTCTGACAAAAGAAGAGATCAATTTGTATGAGGTAGCTCAATCTGCAATGGCATCCTTCAAGAAGTGGCGAATGGGGGGGCCCAGATTTCAGATATCTAATGTTCTGGGAAGAAAGAGAAAATCAACTGAATAG 558 0.4158 MAKYYDIDDIMVEEEIVSVIFQKSASGVGIDPSSETDLIEAGSKVELPFWLAHELQLRQAVSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKSRYKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGRKRKSTE* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5232 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Lja1g5232 185 CDD GINS_A_psf3 61 167 - -
Lja1g5232 185 Pfam GINS complex protein 45 147 IPR021151 -
Lja1g5232 185 PANTHER UNCHARACTERIZED 1 184 IPR010492 -
Lja1g5232 185 Gene3D - 1 167 IPR038437 -
Lja1g5232 185 SUPERFAMILY PriA/YqbF domain 2 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5232 Lja-Chr1 78304190 78309028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5232 1 184 Core DNA Replication Machinery Family AT3G55490 69.022 5.22e-100 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5232 K10734 - gmx:100797609 327.02