Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5215 ATGGCTACTATGATGGACTTTTTCAGCAGCACAGAGTTTCACTCAGATCCATTCAGGGGTGAGTTGATGGAAGTTCTTGAACCTTTTATCAAAAGTTCTTCCCCAACCCCAACCTCAACCTCAACCTTCTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCTCTCCATCTTCATCAAATTCATCTCTACCCTGTTCTTCTCCCCCTAATTCCTTCTACTCTTCTCCTTCTGTCACTCCTTTCTTCTCAGATGGTTGCTCAACATCGATGACCCATGTATTTGCAAACGGGTTATCCTTTGTGCAACCAGCAACTTCTCCTCCTCTTCTTGGCTTCAACCACCTAACCCCATCTCAGATCCATCAGATCCAATCTCAGATCCAGATCCAACAGAACAACCACCTCCCATGGCAGAATCAGAATCAGAATCACCATCTCAACACCACACTCAGCTTCCTTAGTCCGAAGCCGATTCCGATGAAGCACGTGGGGAATCCTCCAAAACCCACGAAGCTATACAGAGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTCGCTGAGATCAGGCTTCCAAAGAATCGGACCAGGCTCTGGTTGGGGACATTTGACACGGCGGAGGAAGCTGCTCTGGCGTACGACAAGGCTGCGTACAAGCTCAGAGGCGACTTTGCTCGGCTCAATTTCCCTAACCTCCGCCACCAGGGATCCTCCGTCGGCGGAGATTTCGGCGAGTACAAGCCTCTGCATTCCTCTGTTGATGCAAAGCTTCAGGCCATTTGTGAAGGCTTGGCTGAGATGCAGAAACAGGGGAAGACAGTGAAGAAGCCTCAGAAGAAATCAAAGGCGGCTTCGACGGCGGCTTCCAAGGTGGTTGCTCCGCCGGAGGCTCCGATGACTCACAAGGAGGAAAATTCAGTTGTTGTTGGTGGTGGTGATGTGAAGGGTTCAGAGAGCACTTGCAAGGTTGAATCTGTTGTGATCAGTGAGAGTGAGCCTTCATCAGAAGGCTCTTCTCCTCTCTCAGATCTAACCTTTGGTGATGTCTATGAGCCACAGTGGGAAGGTGATTCAGATAATTTAAATCTGTTCAAGTACCCATCATATGAGATTGATTGGGATTCTCTGTGA 1137 0.4899 MATMMDFFSSTEFHSDPFRGELMEVLEPFIKSSSPTPTSTSTFSPSSSSSSSSSSSPSPSSSNSSLPCSSPPNSFYSSPSVTPFFSDGCSTSMTHVFANGLSFVQPATSPPLLGFNHLTPSQIHQIQSQIQIQQNNHLPWQNQNQNHHLNTTLSFLSPKPIPMKHVGNPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTVKKPQKKSKAASTAASKVVAPPEAPMTHKEENSVVVGGGDVKGSESTCKVESVVISESEPSSEGSSPLSDLTFGDVYEPQWEGDSDNLNLFKYPSYEIDWDSL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5215 378 MobiDBLite consensus disorder prediction 327 344 - -
Lja1g5215 378 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700|GO:0006355
Lja1g5215 378 PRINTS Ethylene responsive element binding protein signature 198 214 IPR001471 GO:0003700|GO:0006355
Lja1g5215 378 SMART rav1_2 175 238 IPR001471 GO:0003700|GO:0006355
Lja1g5215 378 Gene3D AP2/ERF domain 175 233 IPR036955 GO:0003700|GO:0006355
Lja1g5215 378 ProSiteProfiles AP2/ERF domain profile. 175 232 IPR001471 GO:0003700|GO:0006355
Lja1g5215 378 MobiDBLite consensus disorder prediction 31 69 - -
Lja1g5215 378 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 377 - -
Lja1g5215 378 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 377 - -
Lja1g5215 378 MobiDBLite consensus disorder prediction 30 69 - -
Lja1g5215 378 MobiDBLite consensus disorder prediction 327 362 - -
Lja1g5215 378 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Lja1g5215 378 CDD AP2 174 234 IPR001471 GO:0003700|GO:0006355
Lja1g5215 378 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Lja1g5215 378 MobiDBLite consensus disorder prediction 271 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5215 Lja-Chr1 77719732 77721708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5215 1 378 AP2-EREBP Transcription Factor Family AT1G78080 49.490 2.87e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g5215 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5215 K09286 - gmx:732559 353.214