Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5214 ATGTCATCGGCGGCGGCGGCGAGAACCACCGGAAGAGGCGGTGATGACGACAAGTTCTACCCTCCTCCGCTCACCTCTCATGAGGACATCGTCAATGATGCTAAGCTCTTCTTGGACACTCTCAGGAAATTTCACTTTGTCATGGGTTCCAAGTACATCAGGATGGATTTTCACACCCTTTACGTGGAGGTTACCAGGATGAGCGGTGATGAGAAGGTGGTTGCTGAGAAGAAATGGAGGGAGGTGGGTAGTGTGTTCAATTTCTCTCTTACCACCACAAGTGTTTCTTATGTGCTCAAGAAGCACTATTGGAATCTCCTCTACGATTTCGAACAAGTTCACTTCTTTAAGGTTCGGGGTCCTATTACTCCTCCTGCAGATGCACTTTATGGTAGCAACTCCTCGGGGAAACCTGATTTCGCTCTTGTGAAGTATGCACCTAAGCATGCAAACAATGACCCTGAATCCAATGTTCTCAAAGGGGTGATTTTCCATCTTGAGGAAACAGTTCCTCCTCCATCATCGATTCTGCAGGATGTCGGAGCCATTGTATCGTTCAATCTCAAAGCTCGCCATTCTGGCCGGAGAAGGAGGAACATGAGAAGGTGGGACCGTGATTACCCCAAGCCTAATAGGAATGGCTATAACTTCTTTTTTGCTGAAAAGCACACCAAGCTGAAAGAACTCTACCCAAGTAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGCCAAGGAACAATCTTAGCTCTGATGAAAAAATGGTAATAAAATGGTTTACCAGAACATTGGGGGTGATAGACAAGGAAAGGTATCAGAGAGAATTGGCCGAGTACAAGGAGAAAATGAAGCTTTGGCAACCAGAAGAGGTTGAACGTCCTTAG 882 0.4626 MSSAAAARTTGRGGDDDKFYPPPLTSHEDIVNDAKLFLDTLRKFHFVMGSKYIRMDFHTLYVEVTRMSGDEKVVAEKKWREVGSVFNFSLTTTSVSYVLKKHYWNLLYDFEQVHFFKVRGPITPPADALYGSNSSGKPDFALVKYAPKHANNDPESNVLKGVIFHLEETVPPPSSILQDVGAIVSFNLKARHSGRRRRNMRRWDRDYPKPNRNGYNFFFAEKHTKLKELYPSREREFTKMIGQPRNNLSSDEKMVIKWFTRTLGVIDKERYQRELAEYKEKMKLWQPEEVERP* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5214 293 Gene3D High mobility group box domain 206 290 IPR036910 -
Lja1g5214 293 SMART ARID_2 28 111 - -
Lja1g5214 293 CDD HMGB-UBF_HMG-box 208 283 - -
Lja1g5214 293 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 135 - -
Lja1g5214 293 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 156 289 - -
Lja1g5214 293 SMART hmgende2 207 280 IPR009071 -
Lja1g5214 293 Pfam ARID/BRIGHT DNA binding domain 35 111 IPR001606 GO:0003677
Lja1g5214 293 SUPERFAMILY ARID-like 26 118 IPR036431 GO:0003677
Lja1g5214 293 SUPERFAMILY HMG-box 206 283 IPR036910 -
Lja1g5214 293 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g5214 293 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 208 279 IPR009071 -
Lja1g5214 293 ProSiteProfiles ARID domain profile. 24 115 IPR001606 GO:0003677
Lja1g5214 293 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 135 - -
Lja1g5214 293 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 156 289 - -
Lja1g5214 293 SMART bright_3 32 116 IPR001606 GO:0003677
Lja1g5214 293 Gene3D - 24 120 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5214 Lja-Chr1 77691564 77693572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5214 18 284 ARID Transcription Factor Family AT1G76110 46.753 6.05e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja1g5214 ARID 2.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5214 - - lja:Lj0g3v0300819.2 473.396