Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5211 ATGACAAAACCGAATGTGTTGACCCCTGACACTAAGTCATGTATTACCACGCTTATTGGCGTGCCTGAATCCATGGCTGTGCTTGGTGGGATTTTGGGCATTACACAACACAAAAATGTTGTGAAAAAGTTGGAAGGTGCTAAAGTTAGCACCTGGATTGATTCAATGAGAGCTGCTTCACCAACTAGAGTCAAATCTAATAACTTACCCTCCTCAGAAAACCAAGAAAAATGCTCTTGGATTCTTTATCATCCTTCAGCACTGAGCAAGTTTGATGAGATAAAATATAACTCCAAAGGAAAGAAGATTGTGGTTTTTCTTGACTATGATGGAACTCTCTCACCAATTGTTGCTGATCCTGATAAAGCTTTCATGACTAGACAGATGAGAGCGACACTGAAGAACATAGCAAAACATTTTCCAACTGCTATTGTGACCGGAAGATGCAGAGACAAGGTATTTAACTTTGTAAAATTGGGTGAACTTTACTACGCTGCAAGCCATGGCATGGACATCATGGGACCAACAAAAAGCCGAAATCTTGAGAAAGGTAATGATAAAGTAGTGTTGTTCCAACCTGCTAGTCAATTCCTGCCACTGATCGATGAGGTGTACAAAATATTGTTAGAAAAAACAAAGTCTGTTCCAGGGGCTAAAGTAGAGAACAACAAATTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCAGTGTTAGCAGAGAAAGTTAGGTTGGTGCTTAATGAGTACCCACAACTTAGGCTCACTCAAGGGAGAAAAGTGCTAGAGATCAGACCAACTATCAAATGGGACAAGGGCAAAGCTCTTGAATTCTTGTTAGAGTCGTTAGGGTACGAGAATTCTGATGATGTTTTTCCAATTTACATCGGTGATGATCGAACCGATGAGGATGCTTTTAAGGTTTTAAGAAGAAGGGATCAAGGAGTTGGAATTCTTGTTTCTAGAGTACCCAAAGAAACCGAAGCTTCCTACTCTTTGCAAGATCCATCAGAGGTTGAGCAATTTTTGAGGTGTTTGGTGGAGTGGGAAAGATCCACTATATCGTGA 1077 0.4085 MTKPNVLTPDTKSCITTLIGVPESMAVLGGILGITQHKNVVKKLEGAKVSTWIDSMRAASPTRVKSNNLPSSENQEKCSWILYHPSALSKFDEIKYNSKGKKIVVFLDYDGTLSPIVADPDKAFMTRQMRATLKNIAKHFPTAIVTGRCRDKVFNFVKLGELYYAASHGMDIMGPTKSRNLEKGNDKVVLFQPASQFLPLIDEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAVLAEKVRLVLNEYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSDDVFPIYIGDDRTDEDAFKVLRRRDQGVGILVSRVPKETEASYSLQDPSEVEQFLRCLVEWERSTIS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5211 358 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 313 IPR006379 -
Lja1g5211 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 355 - -
Lja1g5211 358 SUPERFAMILY HAD-like 104 351 IPR036412 -
Lja1g5211 358 CDD HAD_TPP 104 342 - -
Lja1g5211 358 Gene3D - 103 189 IPR023214 -
Lja1g5211 358 Gene3D - 206 357 IPR023214 -
Lja1g5211 358 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Lja1g5211 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 355 IPR044651 GO:0004805|GO:0005992
Lja1g5211 358 TIGRFAM T6PP: trehalose-phosphatase 100 350 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5211 Lja-Chr1 77479954 77483235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5211 99 349 Trehalose Biosynthesis Gene Families AT1G70290 26.199 1.51e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5211 K01087 - gmx:100815979 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5211 1 77479954 77483235 Lja1g5211 1 77479954 77483235 ECH