LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5203	ATGGCCTATCACTTTCTTTATTTGTGCATTCTTGTCATGGAGAAAGTTATCTTTCCCTCTGAAATCTTGAAGGGTTATTTGTACATCCCTGTCATTATGGCTAGCTCAGATGATGATTCATTTATTAATTCAGACGATGGTAGAGATCTTGATAATAATTCTGATAGTAATTGTGACGAAAGTGGTAGTGAAGGAGACAATGAAGCGGACAATGAGCAACCAGTCTTATATACAACACATGTCGGTCACAAAAAGATAGTCGATCTAACGGTCGATGATATACTTGGTCTAAAGTTCAGCCGACAAGAGGAAGCTTATAAATTTTATTCTGCATATGCAAAACTGCATGGGTTTGTTGTGAGAAAAGACATTCGAAGGCGAGATGAAAATGGTGACTTTATTGTTCAGCAGTATGTATGTAACAAAGAGGGATTGAGGAATAAAAAGCATTTGATGAGGGTGGATAGGAAAATGGATCATAGACCACTCACTCGTACGGGCTGTCATGCTAAGCTACGGGTACGCTTTGATTACAAGATATCTTGTTGGAAAGTGGTTTCTTTTAAGGAGGGTCATAACCATGAACTATACCCGGCAAGTGCAGTTCCTTTAATCCCTGCTTACCGTGCGATCAGTGACGCTGATAAAGCTCAGGTGGATAGCTTGAATTCACAAGGTGTCAAAACTTGTCATATTATGGGTTACTTGTTGGCACAGAAAGGGGGATATGCAGGTGTTGGTTTTCTGAAAGAGGATTTATACAATTATTTTCACCGCCAAAAGCGTGATAAGATCAAAGATGGGGATGCACGAATTAGCTTAACTTATCTTCAAGGAAAGGCAGACAATGATGGCATGTTTTTTTCAAGATACACCACTACGGATGATTGTAGACTCCAGAATCTATTTTGGGCAGATAGCACTAGCATAACAGATTTTCAATGCTTTGGTGATGTCCTTGCTTTTGATACCACGTACAATAAGAACAAATATAATCTTCCCCTTGTTATATTCAGTGGATGTAATCATCATTCGCAAACTGTTATTTTTGGTTGTGGTTTGTTAATCAATGAAACTGCAGAGACATATAAGTGGGTGTTAGAAACCTTTTTGGCAGCAATGCGCAATAAGCACCCAAGAGCTGTGGTGACAGATGGTGATAGTGCTATGAGGAAGGCCATCAAGCAGGTATTTCCGAATGCAACACATCGACTTTGTGCTTGGCACTTACACAGAAATGCAAAAGGTAAAACAATGAATGATTCATTTGTGGATGATTTCGAAAAAGCGTTGTATCATAATATGGGCATTGATGAATTCGAAGAGTTTTGGAAGCAGATGGTTGCCAAACATGGGCTTGAAGGAAACGAATGGGTTCGTAAGACTTATGAGAAAAAGTCAATGTGGGCCAATGCATATCTTCGTGATCAGTTTTTTGCTGGTATACGGACTACGTCACGATGTGAAGGAATTAATTCCTATATAAAGTCATATGTTGAGAGAAAAAATAGCGTCGTTGAGCTCTTGCATAGTATGGAGGAAGCATTGAGAGGATATAGACACAACGAGCTTGTTGCTGATTTTAATTCTCTTTTTACTGAACCGGTTATGACCACTTCTCTCCACATGTACGAGCGGGAGGCTTCAAAAATTTTCACATTAGAGATTTTCAGAGAAGTCAAATTTGAGATTGAAGAGGTAGGTGCATTAATGATCATGGAGCGGATAGAAAATGGAGACAGTGTAATGTTTAAGATGAGTAAATTGTTTCAACCCAATAGGATTATTGGTGTTGTTTATGATACTGTGAATTCTTCATTCTCATGTGACTGTCGTCTATTTCAGTCCCGTGGCATTCCATGCTCTCATGTTTTTTGTGCCATGAAACGTGAGCACATGAAATCAATTCCTAGCAGTCTTATTTGCAAACGGTGGACAAAATCTGTCAAGAGTGAGTTCATCTCATCAGATCAATTAGATGAAATGGATCCTGATGTAACCAAAATTACCCGCCGTGGGGCTGCAGCTGCTGCATGTAATAGGCTTTGTGAGATTGCATCAGAAAATGGTAAGTACTTCGATGAAATCAGAGATGAAATCTTAAAGTTGACTTCTAAGTATGACAACAAAAAGGGGTCAAGTAGAACTCAAGGTGATAATTTTAATGATATTCGTGATCCCACTACGGTACCGACAAAAGGCGGCCGTCCTTCAAAGAAGCGGTACAGTAGGACGAGAAGAAGATGTACAAATTGTAGAAAGACTGGACATACATTGAGGACATGTCCCAAGCGCATTGGTACAAAAGATGAGCATATTGCGCATGATGCATCATCACCTCATGAGGATAATGAGATGAGAAGACAAGATAATGAGGACAACACAACATTTAATGATGACAATGTCCAGCACAATGATCACAGTACCCAATATTCAAACTATGCTGAAAATGATAAAGAGGGAACAACACTCAATGAATGCAATATCAAACACAAGGACACAGAGCCGAGTAGTAAGAAAGGAAAAGAAAGAAAGGAAAAGAAAGTTAAACGTTCCACACAAAATTCAATCAATGACTCTGGAAAGCAACCCACTTTGTCTGCTCAGAGACCGCATCTAGAAGCTTATAAAGTTCAACAAACTGGTCTCACAACCCATCATACTGGAAAACAACCTATTTCTTCAGCTCAAAAACCGCATTCGGAAACTCATAAAGTCCAACACACTGGTCACACAATCCATCATATTGGAAAACAAACCATTGATTTTTCCAATAAAGGGAATCCGGAAATTACTCATCGGGTATTGGTTGCACCCCCACCCCCACCGGGGAATGTTGCATTTGCTTATGGCACATCAAACTCACACCTAACATCTTCAAATGATTATGGCACATCAAGCATACCCCATAACATACCATCTGGTTATGGTGCCCTAATCCAGGGGATGCCTATGCCTCCCTTACCATCTAGTTATGGTGCACTTAGTCATGAGATGCCTATGCCTCCCTTTCACGGTGCAGGTCCTTCACGCCCCCAATTTCCCAAATTCCTTGCCGCAATTCACATGTCACAGTATATGGGTGGAGTGCAAAATCTTCATGGTGGTACAAACTTGAGTCATTTGCTTCAAAAAGAAGTAAAAAAAAAAAATTGGAACAATGACAGCGACTCTGAGGATATGCCAAACATAGAACCAAAAAAGGACACATTAGTATTCGACATGTTGGCAAAACAAAGCATGGATATTGCGGCCTTAACATCAATGGTTCAAATTGCCCTAGCTGATATTAACTCCATAAAAAATGTGATGGTGGCGGGCGACATATGCAACAGTCCATGTCAACCTCCATGCCCCCCTTCAACTGTTTCGACGGTTAAAACCAACAAAGGTGAAGGGATTGATGAAGGGTTGCCAAAATCAAAACAACCGAAAAATATAACTGCAAAGAAATTGTTCTCTCCCGCCAAAGAACCATCCAAAACACCTCCCATTTCCCTAAGTTACACTGATTATGCACCGCGCCATGCAACAAATTATGTCAAGCGGACATCAGGAGTGACTATACCACCCTGGATACCTGTGGTGTTTACACCACCAAAGGAGTTCATACTAGATGAGATGCAAGCTGCTGTGGTAGCTTACATATTTGGCAAAAACAAAGATGATGCTAGAGAAGAAGTCATTATTGAAACAAGTGCTGTCTTTGTGACCAGAAATGCATTGTTATCTCTTGCTCCGAAACAAAGAGTTTATCAAGATGTGCTGAACTGGGTTGCATATTCATTAACATGTAAACAAGACAGGACAATTATGGACTACCCAGATGTGTGGTTCTTACCTACCATGTTTTCGGTATATTGCATGGAGCATATGTTGAAGCAATCATCATTTTATTTTAGTATCATCAATTCTCCTCCACCAATAATCACTAAGTACGAGTTGTTCATGCCAGATGATATTGGTAGACAAGGATACAACGACTGCGGAATTTGGGTTGCCAAGTGGATGATGGATGATTGTATATGGACGGAGGCTTATGCAATAACGGTTAACAATGAAACAAGGATGAAACTTGCCCTTGATTTGGTTCTCAACTCTCATAATAAGATCGAGCGGGAAATTATAATGCGGGCAACTCAAAATTGGAATGAGCTGAAAGAGAAACATAATAGACTAGTCAATGTTTAG	4191	0.3997	MAYHFLYLCILVMEKVIFPSEILKGYLYIPVIMASSDDDSFINSDDGRDLDNNSDSNCDESGSEGDNEADNEQPVLYTTHVGHKKIVDLTVDDILGLKFSRQEEAYKFYSAYAKLHGFVVRKDIRRRDENGDFIVQQYVCNKEGLRNKKHLMRVDRKMDHRPLTRTGCHAKLRVRFDYKISCWKVVSFKEGHNHELYPASAVPLIPAYRAISDADKAQVDSLNSQGVKTCHIMGYLLAQKGGYAGVGFLKEDLYNYFHRQKRDKIKDGDARISLTYLQGKADNDGMFFSRYTTTDDCRLQNLFWADSTSITDFQCFGDVLAFDTTYNKNKYNLPLVIFSGCNHHSQTVIFGCGLLINETAETYKWVLETFLAAMRNKHPRAVVTDGDSAMRKAIKQVFPNATHRLCAWHLHRNAKGKTMNDSFVDDFEKALYHNMGIDEFEEFWKQMVAKHGLEGNEWVRKTYEKKSMWANAYLRDQFFAGIRTTSRCEGINSYIKSYVERKNSVVELLHSMEEALRGYRHNELVADFNSLFTEPVMTTSLHMYEREASKIFTLEIFREVKFEIEEVGALMIMERIENGDSVMFKMSKLFQPNRIIGVVYDTVNSSFSCDCRLFQSRGIPCSHVFCAMKREHMKSIPSSLICKRWTKSVKSEFISSDQLDEMDPDVTKITRRGAAAAACNRLCEIASENGKYFDEIRDEILKLTSKYDNKKGSSRTQGDNFNDIRDPTTVPTKGGRPSKKRYSRTRRRCTNCRKTGHTLRTCPKRIGTKDEHIAHDASSPHEDNEMRRQDNEDNTTFNDDNVQHNDHSTQYSNYAENDKEGTTLNECNIKHKDTEPSSKKGKERKEKKVKRSTQNSINDSGKQPTLSAQRPHLEAYKVQQTGLTTHHTGKQPISSAQKPHSETHKVQHTGHTIHHIGKQTIDFSNKGNPEITHRVLVAPPPPPGNVAFAYGTSNSHLTSSNDYGTSSIPHNIPSGYGALIQGMPMPPLPSSYGALSHEMPMPPFHGAGPSRPQFPKFLAAIHMSQYMGGVQNLHGGTNLSHLLQKEVKKKNWNNDSDSEDMPNIEPKKDTLVFDMLAKQSMDIAALTSMVQIALADINSIKNVMVAGDICNSPCQPPCPPSTVSTVKTNKGEGIDEGLPKSKQPKNITAKKLFSPAKEPSKTPPISLSYTDYAPRHATNYVKRTSGVTIPPWIPVVFTPPKEFILDEMQAAVVAYIFGKNKDDAREEVIIETSAVFVTRNALLSLAPKQRVYQDVLNWVAYSLTCKQDRTIMDYPDVWFLPTMFSVYCMEHMLKQSSFYFSIINSPPPIITKYELFMPDDIGRQGYNDCGIWVAKWMMDDCIWTEAYAITVNNETRMKLALDLVLNSHNKIEREIIMRATQNWNELKEKHNRLVNV*	1397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	823	853	-	-
	Lja1g5203	1396	SMART	26again6	607	634	IPR006564	GO:0008270
	Lja1g5203	1396	PANTHER	OS02G0262500 PROTEIN	93	726	-	-
	Lja1g5203	1396	ProSiteProfiles	Zinc finger SWIM-type profile.	594	632	IPR007527	GO:0008270
	Lja1g5203	1396	Pfam	MULE transposase domain	319	413	IPR018289	-
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	737	760	-	-
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	709	870	-	-
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	883	912	-	-
	Lja1g5203	1396	ProSiteProfiles	Zinc finger CCHC-type profile.	747	764	IPR001878	GO:0003676\|GO:0008270
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	44	71	-	-
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	883	900	-	-
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	801	822	-	-
	Lja1g5203	1396	MobiDBLite	consensus disorder prediction	763	800	-	-
	Lja1g5203	1396	Pfam	FAR1 DNA-binding domain	107	197	IPR004330	-
	Lja1g5203	1396	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	93	726	IPR031052	GO:0006355
	Lja1g5203	1396	SUPERFAMILY	Retrovirus zinc finger-like domains	734	772	IPR036875	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5203	Lja-Chr1	77234021	77243113	Dispersed/Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Lja1g5203		MULE	5.4e-29	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5203	-		-	ccaj:109792835	828.165