Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5191 ATGGGAAGGTCTCCATGCTGTGATGAAAATGGCCTTAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTAGTAGAACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGCTAGCAGGTCTTAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACCAATTACTTAAGGCCTGACATCAAGAGGGGGAAATTTTCTCCAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACACACCTTCCGGGAAGAACTGACAATGAGATCAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCAGCCAAGAACTGACCTTGTTTCCACCTTGCCATATCTGCTAGCTCTGGCCAACATGACACAACTCATGGATCATAATCATCAGTCATTTGATGAACAGGCAGTTCAGCTGGCAAAGCTTCAATACCTTAATTACTTACTCCAATCCTCAAACAATCCCTTATGCATGACCAACTCCTATGATCAAAATGCCCTCACAAACATGGAAGCTTTCAGTTTGTTAAACTCAATCTCTAATGTAAAAGAGAACCTTGGTGTGGACTTCTCACAAATGGATACCCAAACCTCATTATTTTCACATGATGGGAATAATATGGCTAGCTCCCAACCACTCCACCACCCAAGCAACATGCTACCTCACTTTCTAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAATAATGAGCAGGGTCAAGGTACTAATAACTTTGCAATAAGTCAAAGGGATCACACTGGTGATGAATCTTCCTGGATAAATATTCCATCTATTAATCCTCCAAATGCAATAGGGACCTCAGGAGATGCCAGTAGCAGCACTTCTAGCTATGGAGGAGCAGGACCCTCACCTTACAATTGGTCTGAATTGTTTTTTGAGGACCCCACTACTATGCATGAGCTATCTTAG 1011 0.4204 MGRSPCCDENGLKKGPWTPEEDQKLVEHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSPEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTQLMDHNHQSFDEQAVQLAKLQYLNYLLQSSNNPLCMTNSYDQNALTNMEAFSLLNSISNVKENLGVDFSQMDTQTSLFSHDGNNMASSQPLHHPSNMLPHFLDPQVSFSSQSCLNNNEQGQGTNNFAISQRDHTGDESSWINIPSINPPNAIGTSGDASSSTSSYGGAGPSPYNWSELFFEDPTTMHELS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5191 336 MobiDBLite consensus disorder prediction 261 314 - -
Lja1g5191 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g5191 336 CDD SANT 69 112 IPR001005 -
Lja1g5191 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g5191 336 CDD SANT 16 61 IPR001005 -
Lja1g5191 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g5191 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g5191 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 289 - -
Lja1g5191 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g5191 336 Gene3D - 69 116 - -
Lja1g5191 336 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 289 - -
Lja1g5191 336 SMART sant 13 63 IPR001005 -
Lja1g5191 336 SMART sant 66 114 IPR001005 -
Lja1g5191 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g5191 336 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g5191 336 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5191 Lja-Chr1 76831326 76833171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5191 1 328 MYB Transcription Factor Family AT1G34670 53.022 7.41e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g5191 Myb_DNA-binding 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5191 K09422 - gmx:100782792 479.944