Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5184 ATGGATAAGCTATGCTGTTTTAAGTCTTCATACTCTCAGCTTGTAGCGTCGCGTTCTTCATCCAGCACTGGTAAGGGAAAAAATCATGATGGCTCAATAAAGTATGGTTTCAGCCTAGTAAAAGGGAGAGCTAACCATCCAATGGAGGATTATCATGTTGCTAAGTTTGTGCAGACACGAGATAAAGAATTGGGTTTATTCGCTATTTATGATGGTCACTTGGGAGACCGAGTGCCTGCCTACTTGCAGAAACATTTGTTTTCCAACATTCTAAAGGAGGAGGAATTTTGGAATGACCCCACTCTTTCTATCTCAAAAGCATATGAAAACACAGATCAGGCTATTCTGTCACAGAGTTCTGATTTGGGGCGAGGTGGATCAACAGCTGTAACTGCAATATTGATCAATGGGCAAAGGTTGTGGATAGCAAATGTTGGAGACTCGAGAGCTGTTCTTTCAAGAAAAGGTCAAGCAGTACAAATGAGTACAGATCATGAGCCCAACACGGAACGAGGCAGCATTGAGACTAAAGGAGGTTTTGTCTCCAACTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTAGCTGTTTCTCGTGCATTCGGAGACAAGAGTCTCAAGTCACATTTGCGATCAGACCCCGATGTACAGAATACCAATGTAGATGCTGATACTGATATTCTAATCCTTGCAAGTGATGGAGTTTGGAAGGTAATGGCTAATCAAGAGGCAGTGGATATTGCTAAAAGAATGAGAGACCCACAGAAAGCAGCTAAGCAACTAACAGCTGAAGCATTAAAAAGGGACAGTAAAGATGATATATCTTGCGTTGTGGTTAAGTTCAGGTGGTGA 852 0.4237 MDKLCCFKSSYSQLVASRSSSSTGKGKNHDGSIKYGFSLVKGRANHPMEDYHVAKFVQTRDKELGLFAIYDGHLGDRVPAYLQKHLFSNILKEEEFWNDPTLSISKAYENTDQAILSQSSDLGRGGSTAVTAILINGQRLWIANVGDSRAVLSRKGQAVQMSTDHEPNTERGSIETKGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQNTNVDADTDILILASDGVWKVMANQEAVDIAKRMRDPQKAAKQLTAEALKRDSKDDISCVVVKFRW* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5184 283 MobiDBLite consensus disorder prediction 156 183 - -
Lja1g5184 283 CDD PP2Cc 33 281 IPR001932 -
Lja1g5184 283 Gene3D - 30 283 IPR036457 -
Lja1g5184 283 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 1 282 - -
Lja1g5184 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Lja1g5184 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Lja1g5184 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Lja1g5184 283 SMART PP2C_4 26 279 IPR001932 -
Lja1g5184 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Lja1g5184 283 PANTHER PROTEIN PHOSPHATASE 2C 1 282 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5184 Lja-Chr1 76513666 76516901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5184 1 282 PP2C-type Phosphatase Gene Family AT1G22280 73.611 2.12e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5184 K17506 - gmx:100797292 517.694