Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5178 ATGGATGCCACTACCCCGAAGTATTCCAAGGCTAGGTATGATGAAATTTTGAAGGAAGTCTCTTCCTACCTGAAGAAGGTTGGTTACAACCCAGACAAGATTCCCTTTGTTACCATCTCTGGTTTCGAGGGCGATAACATGATTAAGAGGTCCACCAACCTTGACTGGTACAAGGGTCCAACTCTTCTTGAGGCTCTTGACCAGATCAACAAGCCAAAGAGACCCACAGACAAGCCTCTAAGGCTTCCATTGCAGGATGTCTACAAGATTGGTGGTATTGGTACTGTGCCTGTTGGACGTGTTGAGACCGGTGTCTTGAAACCTGGTGTGTTGGTGTCTTTTGGCCCCAATGGACTGACAACTGAAGTTAAGTCCATGGAGATGCACCATGAGGCTTTGCAAGAGGCCCTTCCAGGTGACAATGTGGGATTCCATGTGAAGAATGTTGCGGTCAAGGACCTCAAGCGTGGTTTCGTCGCCTCCAACTCTAAGGATGACCCTGCCAAAGAAGCTGCTAACTTCACATCCCAAGTCATCATCATGAACCATCCCGGCCAGATTGGAAACGGATATGCACCAGTGCTCGACCTCGACTGCCACACATCTCACATTGCTGTGAAGTTTTCTGAGATCCTGACCAAGATTGACAGACGATCTGGTTTTGTTAAGATGATTCCTACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCTCCTTGGTCGTTTTGCTGTGAGGGACATGCGACAAACGGTGGTTACGGGAGTCATCAAGAGTGTGGAGAAGAAGGAACCCTCTGGAGCCAAGGTAACCAAGGCTGCACTGAAGAAAAAGTGA 840 0.4845 MDATTPKYSKARYDEILKEVSSYLKKVGYNPDKIPFVTISGFEGDNMIKRSTNLDWYKGPTLLEALDQINKPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGVLVSFGPNGLTTEVKSMEMHHEALQEALPGDNVGFHVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDLDCHTSHIAVKFSEILTKIDRRSGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKEPSGAKVTKAALKKK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5178 279 Pfam Elongation factor Tu C-terminal domain 167 261 IPR004160 -
Lja1g5178 279 CDD EF1_alpha_II 76 166 - -
Lja1g5178 279 CDD EF1_alpha_III 169 258 - -
Lja1g5178 279 Gene3D Translation factors 221 262 - -
Lja1g5178 279 Gene3D Translation factors 168 220 - -
Lja1g5178 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 95 IPR027417 -
Lja1g5178 279 PANTHER TRANSLATION FACTOR 1 278 - -
Lja1g5178 279 Gene3D Translation factors 75 162 - -
Lja1g5178 279 PANTHER ELONGATION FACTOR 1-ALPHA 1 278 - -
Lja1g5178 279 SUPERFAMILY Translation proteins 77 207 IPR009000 -
Lja1g5178 279 Pfam Elongation factor Tu domain 2 94 159 IPR004161 GO:0005525
Lja1g5178 279 Gene3D - 1 72 IPR027417 -
Lja1g5178 279 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 172 261 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5178 Lja-Chr1 76113365 76119003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5178 1 272 Eukaryotic Initiation Factors Gene Family AT5G60390 84.722 5.45e-177 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5178 K03231 - rcu:8264984 510.375