Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5168 ATGGATTCTTCTCCTGCTGATGAAGAACTTGAAAGAAAGGAGATGTATGCACCATACCTCCACAAAGTGGCAGTTCCTCCAAAACAGAACCTCTTCAAGGAATTCCAATCCACTGTGAAAGAAACATTCTTCTCCGACGATCCTCTACGATCCTTCAAAGATCAAACTAAATCGAAGAAGCTCATCCTCGGTGTCGAGGCCATATTCCCCATACTTAACTGGGGGAGAGCTTACAACCTTAAAAAATTCAGGGGGGATGTCATATCTGGTCTCACTATTGCAAGTCTTGCCATTCCTCAGGATATTGGATATGCCAAGCTTGCACATTTGGCTCCACAATATGGACTGTACTCAAGCTTTGTTCCTCCTCTGATATATTCTGCCATGGGAAGTTCTCGCGACATTGCAATAGGACCGGTAGCAGTGGTTTCTCTCTTGATGGGTACTTTGCTCAGTAATGAGATTGATCCTGTTACAAACGCTGAAGAATATCGGCGACTCGCATTTACAGCCACATTTTTTGCCGGGATTACTCAAGCAACACTTGGGATTTTCAGGTTAGGATTCTTGATTGACTTTCTATCCCATGCTGCTGTTGTTGGTTTCATGGGGGGTGCTGCCATTACAATTGCCCTACAACAACTTAAGGGCTTCCTCGGCATTAAAACTAAAGATTTCACCACCAAAACTAATATTGTCTCAGTGATGCGTTCAGTGTTCTCATCAGCCCATCATGGATGGAACTGGCAAACTATAGTAATTGGAGCTAGCTTTTTGGGTTTTCTTCTGGTCGCCAAATATATTGGAAAGAAGAACAAGAAATTCTTCTGGGTGCCAGCAATCGCGCCATTGATATCAGTAGTGCTGTCCACTTTTTTCGTGTTTATAACCCGTGCAGATAAGCAAGGTGTAGCGATTGTGAATTACATTGAGAAAGGGATCAATCCTTCATCTGTTAGTGAAATTTACTTTAGCGGCGAAAACCTCGGGAAAGGTTTTAGAATTGGTGTCTTGGCAGGAATGATAGCACTGACTGAAGCTGTAGCGATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTAGATGGGAACAAGGAAATGGTAGCATTAGGAGCAATGAATATTGTTGGTTCCATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCCGCGGTGAATTACATGGCTGGCTGCCAAACTGCGGTCTCTAATATTGTGATGGCAATAGCTGTGTTCTTAACTCTTGAGTTCTTAACTCCTCTTTTTAAGTACACTCCAAATGCCATTCTTGCTGCTATCATCATTGCTGCTGTCATCAGCCTTGTAGACATTCAGGCAGCCATATTGATCTGGAAGGTTGACAAGTTTGATTTTATTGCTTGCATGGGAGCGTTCTTCGGGGTTGTTTTCGTCTCAGTTGAGATTGGACTTCTGATCGCGAAACTTGGGCGGCAGGTCTCCATATCGTTCGCAAAGATCCTACTACAAGTCACGAGGCCCCGAACTGCTATTCTGGGAAAGATTCCTAGGACTTCTGTCTATAGAAACATCCAACAATACCCAGAAGCTAGTAAGGTTCCTGGTGTACTGATTGTGAGAGTTGATTCTGCTGTATATTTTTCCAACTCCAATTATGTTAAAGAAAGGATATTGAGATGGCTGATAGATGAAGAAGAAAAAGTGAAAGGAGAGTACCACATAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGACATAGATACCAGTGGCATTCATGCCTTTGAAGAGTTACACAGAAGTCTTAAAAAGAGAGGTGTTGAGCTTGTTCTTGCAAATCCTGGTCCTGCAGTGACAGACAAGCTCTACACATCGAATTTCGCCAACTTAATCGGCGAGGACAAGATCTTCGTCACTGTTGCAGAGGCTGTTGCACACTGTTCTCCCAAGCTGGCTGAGGAGGAACCATGA 1965 0.4321 MDSSPADEELERKEMYAPYLHKVAVPPKQNLFKEFQSTVKETFFSDDPLRSFKDQTKSKKLILGVEAIFPILNWGRAYNLKKFRGDVISGLTIASLAIPQDIGYAKLAHLAPQYGLYSSFVPPLIYSAMGSSRDIAIGPVAVVSLLMGTLLSNEIDPVTNAEEYRRLAFTATFFAGITQATLGIFRLGFLIDFLSHAAVVGFMGGAAITIALQQLKGFLGIKTKDFTTKTNIVSVMRSVFSSAHHGWNWQTIVIGASFLGFLLVAKYIGKKNKKFFWVPAIAPLISVVLSTFFVFITRADKQGVAIVNYIEKGINPSSVSEIYFSGENLGKGFRIGVLAGMIALTEAVAIGRTFASMKDYQLDGNKEMVALGAMNIVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMAIAVFLTLEFLTPLFKYTPNAILAAIIIAAVISLVDIQAAILIWKVDKFDFIACMGAFFGVVFVSVEIGLLIAKLGRQVSISFAKILLQVTRPRTAILGKIPRTSVYRNIQQYPEASKVPGVLIVRVDSAVYFSNSNYVKERILRWLIDEEEKVKGEYHIKIQFLIVEMSPVTDIDTSGIHAFEELHRSLKKRGVELVLANPGPAVTDKLYTSNFANLIGEDKIFVTVAEAVAHCSPKLAEEEP* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5168 654 ProSitePatterns SLC26A transporters signature. 112 133 IPR018045 GO:0008271|GO:0008272
Lja1g5168 654 ProSiteProfiles STAS domain profile. 522 645 IPR002645 -
Lja1g5168 654 PANTHER SULFATE TRANSPORTER 16 652 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja1g5168 654 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 16 652 - -
Lja1g5168 654 CDD STAS_SulP_like_sulfate_transporter 523 638 - -
Lja1g5168 654 Gene3D STAS domain 502 649 IPR036513 -
Lja1g5168 654 TIGRFAM sulP: sulfate permease 70 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja1g5168 654 Pfam STAS domain 523 641 IPR002645 -
Lja1g5168 654 Pfam Sulfate permease family 83 465 IPR011547 GO:0016021
Lja1g5168 654 SUPERFAMILY SpoIIaa-like 524 646 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5168 Lja-Chr1 75736132 75740908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5168 3 652 Inorganic Solute Cotransporters AT1G22150 74.620 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5168 K17470 - gmx:100804208 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5168 1 75736132 75740908 Lja1g5168 1 75736132 75740908 ECH
Lja1g5931 1 108513074 108519105 Lja1g5168 1 75736132 75740908 PCT