Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5167 ATGAGTTCAGTGCTCACTGATTCCACCATGAGAGTCCTAGAGCAAGGACACTTTCATCTTGAGGATACTAGTCAAACAGAGAGATCCCTATGGATGCTGAACTCTCCTAATCCACCACCTCTCTGGAAGAAGCTACTTAGTCCATTGAAGGACACCAAGTTCCTTTCTTCATCCAAGAACAAAACTTGCTGTGGACATGCTATCTCATCCTTGCAGAGCTTATTCCCAATCCTTAGCTGGTTCAGAAATTACGATGCGTCCAAGTTTAAAGATGATTTGATAGCAGGTTTAACTCTTGCTAGCCTCAGCATACCTCAGAGTATAGGATATGCCAATTTAGCAAGACTTGATCCTCAATATGGCCTATACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGCTCAAGAGACATTGCTATTGGACCTGTAGCTGTAGTGTCACTGCTACTATCATCCCTGGTTCAAAATGTGGTTGATCCTGATGCAAATCCCGATGCCTACAGAAATATTGTCTTTACAGTTACCTTATTTGCTGGAATCTGTCAAGCTGCATTTGGAGTTTTCAGGTTGGGATTTCTTGTGGATTTTCTTTCACATGCTGCCCTTGTAGGATTCATGGCAGGTGCTGCCATCATTATTGGTCTTCAACAGCTCAAGGGGTTGTTGGGGCTTACCCACTTTACCTCCAAGACTGATGTAATATCAGTGTTGGAATCTGTTTATAAGTCACTCCATATTCAACTTACATCTGAAGAAAAATGGTACCCACTGAATTTTATAATCGGGTGCTCATTCCTGATTTTCCTTTTAATGGCCAGATTTATTGGCAGAAGAAACAAAAAGCTTTTCTGGTTGGCTCCGATTGCTCCTCTTATATCATTTGTATTATCTACTTTTATTGTGTATATTTCAAGAGCTGATGAGAAAGGGGTGAATATAATAAAGCATGTAAAAAAAGGCCTGAATCCAAGTTCCACTCACCAATTACAATTGCATGGTCAACATGTTGGAGAAACTGCTAAAATTGGATTGATTTGTGCTGTCATTGCTCTCACTGAAGCAATTGCTGTTGGTCGATCTTTTGCTTCCATCAAGGGGTACCATCTTGATGGGAACAAAGAAATGCTGGCCATGGGGTGTATGAACATTGCAGGATCCTTCACTTCTTGCTATGTGGCAACCGGTTCATTCTCAAGAACTGCAGTCAACTTCAGTGCTGGATGTAAAACATCAGTATCAAACATTGTAATGGCAGTTACTGTGCTTCTGTGCCTGGAACTGTTTACAAAGCTCTTATACTACACTCCTCTGGCCATACTCGCTGCAATAATCCTCTCAGCACTTCCTGGATTAATTGACATACCTGAAGCTTGCTATATCTGGAAGGTTGACAAATTAGATTTCCTCGCTTGCATCGGTGCTTTCCTTGGAGTCTTGTTTGTATCAGTAGAAATTGGCCTTCTTATTGCAGTGTCAATTTCCTTTGCAAAGATACTAATAAATTCTATAAGACCTGGGATAGAAGTTCTAGGTAGAATTCCAAGAACAGAAGCCTACAACGATGTTAGTCAATTTCCCATGGCCATAAGCACTCCAGGCATCTTGGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCAAATGCTAATGTTGTCATAGAAAGAATATTGAAATGGGTCACTGAAGAAGAAGACAAGCTTATTGAAGAAACTGCAAGGGGAAGTGTCAAAGCTGTGATAATTGAAATGACCAACCTCATGAATGTTGATACTTCCGGAATTATAGCGTTGGAGGAACTTCATAAGAGTTTGCATTCGCGTGGAGTTCAATTGGCAATAGTGAACCCGAGGTGGCTAGTAATTCACAAGCTTAAACTGGCACACTTCGTGGATAAAATTGGAAAAGAATGGATTTTCCTTACTGTGGCTGAAGCCGTGGATGGATGTGTGTCTTCTAAATTCGCTGACACGTGA 1983 0.4135 MSSVLTDSTMRVLEQGHFHLEDTSQTERSLWMLNSPNPPPLWKKLLSPLKDTKFLSSSKNKTCCGHAISSLQSLFPILSWFRNYDASKFKDDLIAGLTLASLSIPQSIGYANLARLDPQYGLYTSVVPPLIYAVMGSSRDIAIGPVAVVSLLLSSLVQNVVDPDANPDAYRNIVFTVTLFAGICQAAFGVFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGLTHFTSKTDVISVLESVYKSLHIQLTSEEKWYPLNFIIGCSFLIFLLMARFIGRRNKKLFWLAPIAPLISFVLSTFIVYISRADEKGVNIIKHVKKGLNPSSTHQLQLHGQHVGETAKIGLICAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSFTSCYVATGSFSRTAVNFSAGCKTSVSNIVMAVTVLLCLELFTKLLYYTPLAILAAIILSALPGLIDIPEACYIWKVDKLDFLACIGAFLGVLFVSVEIGLLIAVSISFAKILINSIRPGIEVLGRIPRTEAYNDVSQFPMAISTPGILVIRISSGSLCFANANVVIERILKWVTEEEDKLIEETARGSVKAVIIEMTNLMNVDTSGIIALEELHKSLHSRGVQLAIVNPRWLVIHKLKLAHFVDKIGKEWIFLTVAEAVDGCVSSKFADT* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5167 660 TIGRFAM sulP: sulfate permease 76 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja1g5167 660 CDD STAS_SulP_like_sulfate_transporter 528 645 - -
Lja1g5167 660 Gene3D STAS domain 507 655 IPR036513 -
Lja1g5167 660 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271|GO:0008272
Lja1g5167 660 ProSiteProfiles STAS domain profile. 544 652 IPR002645 -
Lja1g5167 660 PANTHER SLC26A/SULP TRANSPORTER-RELATED 17 659 - -
Lja1g5167 660 SUPERFAMILY SpoIIaa-like 534 650 IPR036513 -
Lja1g5167 660 Pfam Sulfate permease family 89 475 IPR011547 GO:0016021
Lja1g5167 660 PANTHER SULFATE TRANSPORTER 17 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja1g5167 660 Pfam STAS domain 531 648 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5167 Lja-Chr1 75661990 75670328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5167 25 656 Inorganic Solute Cotransporters AT5G10180 61.129 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5167 K17469 - gmx:100805269 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5167 1 75661990 75670328 Lja1g5167 1 75661990 75670328 ECH
Lja1g5930 1 108466158 108482623 Lja1g5167 1 75661990 75670328 PCT