LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5155	ATGGATGGGAAGGCTAACCTTCCGACCAAACCAGACTCCTCCTCTTCGCCGGAGTTCCTCCGCCATGTTCAGGCCGCCCTGAAACGCCACCGTCCTCTCGGTACAATGCAGTCCAATAAAATAAGGCCAAGGCGCACGCTGCTTCCACAAACACAGGATTCGCTCACCCTCAGGAACAATGCTCCTTCTTCCGATGCATCGATTACGCCACCTTCAGCGTCTTCTGAGAGCAGCACTGTTGACCCTTCTCAAAATGCAGATGCTCACAGGAAATCCCAGTTTTCGGTTCAAGCCGGCGCTGCCCGGCAGGAAATGGAGTGGGTTGAAAGCAGCCAGCTCGAGGGGTCGATTGGATTCAACCAGGACTTGAAGCACCCCAAAATTCAGCAGGCTGAGCTTGACATGAATTTGTTGCCAAAGAGAGCTACGGGAGTTACCCGCGATCATATGCAGCAATTCAGTAACTTTTTGAGCCAGCCAGCAACGCAGTCTTCGGTGGCGGGGCCTTCGTGTGCTACGACTACCTCAGTCCATTCAACCTCAGCTCCCATGCTTAATTCAACTACCCGGATTTTAAGTTCGCGGCTTGATGGTGGTTCGTGTCTGACTGCTGAGCCTTTGGGGGAGATTGATGTTAATCCTGATCCTATGAGTAAAAGGGTTATGGAATTAACGAATGCTTCCTTGAGGGAAACCAGTAGAATGTCTATTGATCAGGCAGCAGTTTCTGTCCCAGCTGCTGACTCTTGTATTGATGCGGAGTTGGCATCTAAGGATAGTGATCAATCTAAGGGGCAACAAGAATGTGTGACAAAAGAAATCAGCAATTCAAACTATACTTCTTGTGATGATGACAGGTTGGCTAAAGGGAAAGAGCCTGCAGATGCTGCCAATATACAACCTCAGGCTCCAATGCCGAAAAACTCATCATCAGATGTTAAGTTGGAGACTTCTAAGTTAGAAAAGCGGGACAAGGCTGCTAGCGGCAAAGGTTCATCAGCCGCTCGGAAAAGGACCTATGACCCTGATTTGTTTTTTAAGGTCAATGGCAAGCTTTATCAACGCCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTTCACAAAGTGATTTCATCAGACTGTAAGATCTATGCACTTAAAAAAATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTCTGTCAAGAGATTGAGTATCTACATAGGCTGAAGGGAAAGGATAATATCATACAACTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCCTTTAGCAATAAGGATGGCCGAGTCAAGGATGATGGATTTATATACATGGTACTTGAATATGGGGAAATCGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAACTGGATGGGTACAAGGAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACTATTCATGAGGAGCGTATTGTGCACTCTGACCTGAAGCCAGCTAATTTTCTCCTAGTCAAAGGTTCTCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGTGATACGACCAACATCCAAAGGGATTCACAGGTGGGCACTCTGAGTTATATGTCTCCAGAGGCATTTCTGTGTAATGAGACTGATGCGAATGGAAACATCATCAAATGCGGTCGTCCATCAGATATCTGGTCCCTGGGTTGCATCCTTTATCAAATGGTATATGGGAGAACACCATTTTCTGAATACAAGACATTTTGGGCCAAATTCAAAGTAATTACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAACATATGGCTAGTAGATCTTATGAAAAGGTGTCTAGCATGGGATCGTAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACACCCTTTCCTTGTCCCTCCAGTGCCACGTCATCCATCTCTGTCTCAAGACAATAACTGCAAATTGCTACAACTTATTGGTGAAACATGTACATATGACCCCGAAGCATCCCATCTATGCTCACAGCTCCAACAGCTACTTGATGATCCACTCGAGTTTACAACCCACTCACTAAATTCGCGAGATCAATATCAAAAACTTTTGTCCCAAATGTCAGAACTCTGTATTCAGCTGCAGGAACGTCTGATACATACTGATAACAAGTAG	2193	0.4501	MDGKANLPTKPDSSSSPEFLRHVQAALKRHRPLGTMQSNKIRPRRTLLPQTQDSLTLRNNAPSSDASITPPSASSESSTVDPSQNADAHRKSQFSVQAGAARQEMEWVESSQLEGSIGFNQDLKHPKIQQAELDMNLLPKRATGVTRDHMQQFSNFLSQPATQSSVAGPSCATTTSVHSTSAPMLNSTTRILSSRLDGGSCLTAEPLGEIDVNPDPMSKRVMELTNASLRETSRMSIDQAAVSVPAADSCIDAELASKDSDQSKGQQECVTKEISNSNYTSCDDDRLAKGKEPADAANIQPQAPMPKNSSSDVKLETSKLEKRDKAASGKGSSAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCKIYALKKIKLKGRDYATAFGFCQEIEYLHRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRVKDDGFIYMVLEYGEIDLAHMLSQKWKELDGYKETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFLCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNIWLVDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPRHPSLSQDNNCKLLQLIGETCTYDPEASHLCSQLQQLLDDPLEFTTHSLNSRDQYQKLLSQMSELCIQLQERLIHTDNK*	731

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5155	730	MobiDBLite	consensus disorder prediction	28	98	-	-
	Lja1g5155	730	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	500	512	IPR008271	GO:0004672\|GO:0006468
	Lja1g5155	730	MobiDBLite	consensus disorder prediction	281	336	-	-
	Lja1g5155	730	SUPERFAMILY	Protein kinase-like (PK-like)	347	652	IPR011009	-
	Lja1g5155	730	Coils	Coil	703	723	-	-
	Lja1g5155	730	Pfam	Protein kinase domain	353	646	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g5155	730	PANTHER	DUAL SPECIFICITY PROTEIN KINASE TTK	9	702	IPR027084	GO:0004712\|GO:0007093\|GO:0051304
	Lja1g5155	730	PANTHER	MIXED LINEAGE PROTEIN KINASE	9	702	-	-
	Lja1g5155	730	MobiDBLite	consensus disorder prediction	39	98	-	-
	Lja1g5155	730	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lja1g5155	730	CDD	PKc_Mps1	351	646	-	-
	Lja1g5155	730	MobiDBLite	consensus disorder prediction	314	336	-	-
	Lja1g5155	730	Gene3D	Phosphorylase Kinase; domain 1	346	432	-	-
	Lja1g5155	730	ProSiteProfiles	Protein kinase domain profile.	353	646	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g5155	730	SMART	serkin_6	353	646	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g5155	730	ProSitePatterns	Protein kinases ATP-binding region signature.	359	381	IPR017441	GO:0005524
	Lja1g5155	730	Gene3D	Transferase(Phosphotransferase) domain 1	468	649	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5155	Lja-Chr1	75225057	75229262	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5155	359	647	MAP Kinase Kinase Kinase	AT4G08470	28.669	5.43e-24	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Lja1g5155		Pkinase	3.4e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5155	K08866		-	gmx:100788990	1050.43