Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5154 ATGGAGGATTTGCATAGTGCCTTGGAGGATCGTAGCTTAGCAGTTTCCACCGTCCCGCAGAAGGGTCGCTCTCTCTTCACCACAAGGGACTTCTACCCAGGGGAGGTGATTTTGACTCAAGAACCTTATGTTTCTGTTCCAAACAATAACTCCTCTGTCTCTGCCCAGAAAAGGTGTGATAGATGTTTCACCACAACTAACCTCAGCAAGTGCTCCCGCTGCCAAACTGTGTGGTATTGTGGAACCGCGTGTCAGAAGTCGGAGTGGAAGTTTCATCGTCTTGAATGTGAGGTCCTTTCTAGACTGGACAAAGACAAGAGAAAATCCGTCACGCCATCCATACGGCTGATGGTGAAGCTTTATGTTCGAAGGAAGTTGCAACATGAAAAGATCATCCCAAGCACTGCAATGGACAACTACAAGTTAGTGGAGGCGTTAGTGGCTCACATGTCTGATATCACTGAGGAGCAGCTGGTGCTGTATGCGCAGATGGCTAATCTTGTACACTTAATAGTACAATGGCCAGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCACATACCATTTCTGACAGTGAGTTGAGACCTCTGGGAATTGGATTGTATCCTGTTATTTCTATTATTAATCACAGCTGCTTGCCCAATTCTGTGTTGGTTTTTAAGGGAAGGTCAGCATCAGTACGTGCTGTGCAGCATGTACCCAAAGGGACTGAGGTACTGATAAGTTATATAGAGACAGCTGGAAGCACTGTGACTCGACAGAAGGCTCTCAAAGAGCAGTACTTATTCACTTGTACTTGTCCCCGTTGTTCTAAAGCGGGTCAGTATGATGACATCCAAGAAAATGCGATTCTAGAAGGATACAGGTGCATGAATGAACAATGTGATGGTTTCCTGCTTCGAACAACTGATGGAAAAGGATTCCAATGTCAAAAGTGTGGATTAGTTAGGGAAAAGGATGAGGTAAAGAAAATTGCAGCTGAAATAAAATCTCTATCAGAAGAAGAAGCTTCTAGGCTTTCTTGCAGTGGCAATGATCATGAAGCTGTTTCCATATATAAAATGGTTGAGAAACTGCAAACAAAACTATATCATCCTTTTTCAATCATCTTGATGCAAACTCGAGAGAATATTTTGAAGTCATTAATGAAGCTGGAAGATTGGAAAGAAGCTTTAGCATACTGCAGATTGACTATACCAGTGTATCAAAGAGTGTATCCAGCTGTTCATCCTTTGCTTGGTTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTGGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCAGCGGATGTACTACGGATTACTCATGGAACAAATACACCTTTCATGAAGGAGCTCTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCGTCTTACAAATATTCCTCTTAA 1449 0.4224 MEDLHSALEDRSLAVSTVPQKGRSLFTTRDFYPGEVILTQEPYVSVPNNNSSVSAQKRCDRCFTTTNLSKCSRCQTVWYCGTACQKSEWKFHRLECEVLSRLDKDKRKSVTPSIRLMVKLYVRRKLQHEKIIPSTAMDNYKLVEALVAHMSDITEEQLVLYAQMANLVHLIVQWPEINIKEIAENFSKFACNAHTISDSELRPLGIGLYPVISIINHSCLPNSVLVFKGRSASVRAVQHVPKGTEVLISYIETAGSTVTRQKALKEQYLFTCTCPRCSKAGQYDDIQENAILEGYRCMNEQCDGFLLRTTDGKGFQCQKCGLVREKDEVKKIAAEIKSLSEEEASRLSCSGNDHEAVSIYKMVEKLQTKLYHPFSIILMQTRENILKSLMKLEDWKEALAYCRLTIPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAADVLRITHGTNTPFMKELLMKLEEARAEASYKYSS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5154 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 476 - -
Lja1g5154 482 SUPERFAMILY SET domain 11 250 IPR046341 -
Lja1g5154 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 476 - -
Lja1g5154 482 Gene3D SET domain 24 277 IPR046341 -
Lja1g5154 482 Pfam MYND finger 59 96 IPR002893 -
Lja1g5154 482 SUPERFAMILY TPR-like 346 450 IPR011990 GO:0005515
Lja1g5154 482 Gene3D - 109 193 - -
Lja1g5154 482 Gene3D - 58 108 - -
Lja1g5154 482 ProSiteProfiles Zinc finger MYND-type profile. 59 96 IPR002893 -
Lja1g5154 482 Coils Coil 322 342 - -
Lja1g5154 482 Pfam SET domain 22 250 IPR001214 GO:0005515
Lja1g5154 482 ProSitePatterns Zinc finger MYND-type signature. 59 96 IPR002893 -
Lja1g5154 482 SMART set_7 11 257 IPR001214 GO:0005515
Lja1g5154 482 Gene3D Tetratricopeptide repeat domain 405 481 IPR011990 GO:0005515
Lja1g5154 482 ProSiteProfiles SET domain profile. 11 251 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g5154 SET 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5154 K11426 - gmx:100789518 775.393