Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5147 ATGGGACTTGGAAAGACTTTGCAAGCTATCTCCTTTTTAAGTTATTTAAAAGTGTACCAGTTGTCACTTGGGCCATTTTTGGTTCTATGTCCTTTAAGCGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTGCCCCTAAACTGGAAGTCTTAAAATATGTTGGTGATAAAGAACACGGGCGCAGTCTACGCATGAAAATACACCAACATGTAACAAGGCAATCATCAAAACTTAACGTCATGTTGCCTTTTGATTTGCTGTTAACGACATATGACATTGCCCTGATGGATAAGGATTTTCTTGCGCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAACGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGACCGCTATATCATGCCAAGACGGTTGTTGATGACTGGCACGCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAAGATCGACTTCAAATCCTGAGAAGTGTATTGGGGGCCTTTATGCTTCGACGTACCAAATCGAAGCATATGGAATGTGGAAATTTAGTGTTGCCACCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTAGAGAAAAAGGTCTATGTGTCAATATTGAGGAAGGAACTTCCTAAGCTACTTTCACTATCTTCTGGAACATCAAATCATCAATCACTACAAAATATTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCACGTTTTGTGTATAAACCTTGTCACAGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGGAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAGAAACCTCTGCAGTTGGAACTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGATCCCACTGAGATTAATGATGGAAAACAAAAGGACATGGACTTACCAGATACTAATGCTATAGCTGATAGGGTGATTGCTATGCGTGATGAACAAATATTTAACAAGGATGACAAGAAATTCGAGATGAATCCTAGAAACATTTTAAAAGGTCGCGATCTTAAGGAAGTAGGTTCTGCTTCTCTCTCTATTGATCTTGATCTTGATGAGGCTTCATATCTTTCTTGGGTTAAAAAATTTGAGGGGTGTCTAAATCAACTAGCGACACAATCACGGACCTGCGTTGACACTTCTGGACGCTGGGGCCGTGGTGGACTGTTCGATGCGCTGGTCAAACTTTCGACAAGCATCAATGATGCATATAAACAGGCTTCTGAACATGGAGACCTGCGTCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGAAAACAATATGAATGGTGATGCTCCTCCCAAGATGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTCCCTAGAGGTGAAATCTCACTTCTCGACTTGGAAAGCTGCTTGAAAAAGGCAGCGTTTTCAGCTGCTCGAAATTCCGATATTATTATCGAAGATCACATTCCAGCTCCAGGTCTAGTTAACTCGCCAGACTCGAAGGATAATTCTGATCAACATAATGTTAAAGATATCACGGGACTTGATTGTTAG 1773 0.4072 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVLVPLVSLEKKVYVSILRKELPKLLSLSSGTSNHQSLQNIVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLELSLNVTGDNILEHEDKETSAVGTSDLKSIIFGLHMFDPTEINDGKQKDMDLPDTNAIADRVIAMRDEQIFNKDDKKFEMNPRNILKGRDLKEVGSASLSIDLDLDEASYLSWVKKFEGCLNQLATQSRTCVDTSGRWGRGGLFDALVKLSTSINDAYKQASEHGDLRLGDLHLIRLEDGCDENNMNGDAPPKMVALAVVQSYNPRRKVPRGEISLLDLESCLKKAAFSAARNSDIIIEDHIPAPGLVNSPDSKDNSDQHNVKDITGLDC* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5147 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Lja1g5147 590 MobiDBLite consensus disorder prediction 576 590 - -
Lja1g5147 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Lja1g5147 590 MobiDBLite consensus disorder prediction 567 590 - -
Lja1g5147 590 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 269 439 - -
Lja1g5147 590 Gene3D - 266 400 IPR027417 -
Lja1g5147 590 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 450 557 - -
Lja1g5147 590 PANTHER HELICASE CHR10-RELATED 1 270 - -
Lja1g5147 590 Gene3D - 1 219 IPR038718 -
Lja1g5147 590 PANTHER HELICASE CHR10-RELATED 450 557 - -
Lja1g5147 590 PANTHER HELICASE CHR10-RELATED 269 439 - -
Lja1g5147 590 Gene3D Leucine Aminopeptidase, subunit E, domain 1 442 570 IPR043472 -
Lja1g5147 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 347 IPR027417 -
Lja1g5147 590 Pfam SNF2-related domain 1 277 IPR000330 GO:0005524|GO:0140658
Lja1g5147 590 SMART ultradead3 1 171 IPR014001 -
Lja1g5147 590 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 270 - -
Lja1g5147 590 SUPERFAMILY Macro domain-like 451 554 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5147 Lja-Chr1 74726260 74794161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5147 7 247 RAD5 or RAD16-like Gene Family AT5G22750 24.903 6.54e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g5147 SNF2_N 1.6e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5147 K20092 - oeu:111375362 466.077