Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5142 ATGGCACAAACGCTGGCAATGCCCGTTGCACCCTCTCTCGCCGCAATCAGCAACGGCCACCACCACTTCTCCAGCAGAGTTTCCCTTCCTGTTGCCAACACTCCCAAGGTTCAGGGGTTGAGCATCAAATCGGTTCGTGTTGGCGGTGTTGAGATTCCAAACAATAAGCGAATTGAATTCTCATTGCAGTATATTCATGGAGTTGGGAGGGTCAGAGCGCGGAAGATCCTCTGTGACCTCAACATGGATAACAAAATCACCAAGGAGCTTTCTGAGGAGGAGCTCATCACTCTCAGGGATGAAGTTTCCAAATACATGATTGAAGGAGACTTGCGACGGTTCAACGCGACTAATATAAAGAGATTGAAGGATATCCAGTGTTACAGAGGCATAAGGCACATTCAGGGGCTTCCTTGCAGAGGACAGCGTACTAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCTGGCAAGAAGAAGAAGTAA 495 0.4828 MAQTLAMPVAPSLAAISNGHHHFSSRVSLPVANTPKVQGLSIKSVRVGGVEIPNNKRIEFSLQYIHGVGRVRARKILCDLNMDNKITKELSEEELITLRDEVSKYMIEGDLRRFNATNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5142 164 ProSiteProfiles Ribosomal protein S13 family profile. 47 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142 164 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 163 - -
Lja1g5142 164 Hamap 30S ribosomal protein S13 [rpsM]. 44 160 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142 164 SUPERFAMILY S13-like H2TH domain 45 156 IPR010979 GO:0003676
Lja1g5142 164 ProSitePatterns Ribosomal protein S13 signature. 129 142 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142 164 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 163 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142 164 Gene3D - 45 113 - -
Lja1g5142 164 TIGRFAM uS13_bact: ribosomal protein uS13 46 155 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142 164 Pfam Ribosomal protein S13/S18 46 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142 164 Gene3D 30s ribosomal protein s13, domain 2 114 164 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5142 Lja-Chr1 74628578 74629632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5142 45 162 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.639 1.80e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5142 K02952 - gmx:100499902 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5142 1 74628578 74629632 Lja1g5142 1 74628578 74629632 ECH