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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Lja1g5142
ATGGCACAAACGCTGGCAATGCCCGTTGCACCCTCTCTCGCCGCAATCAGCAACGGCCACCACCACTTCTCCAGCAGAGTTTCCCTTCCTGTTGCCAACACTCCCAAGGTTCAGGGGTTGAGCATCAAATCGGTTCGTGTTGGCGGTGTTGAGATTCCAAACAATAAGCGAATTGAATTCTCATTGCAGTATATTCATGGAGTTGGGAGGGTCAGAGCGCGGAAGATCCTCTGTGACCTCAACATGGATAACAAAATCACCAAGGAGCTTTCTGAGGAGGAGCTCATCACTCTCAGGGATGAAGTTTCCAAATACATGATTGAAGGAGACTTGCGACGGTTCAACGCGACTAATATAAAGAGATTGAAGGATATCCAGTGTTACAGAGGCATAAGGCACATTCAGGGGCTTCCTTGCAGAGGACAGCGTACTAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCTGGCAAGAAGAAGAAGTAA
495
0.4828
MAQTLAMPVAPSLAAISNGHHHFSSRVSLPVANTPKVQGLSIKSVRVGGVEIPNNKRIEFSLQYIHGVGRVRARKILCDLNMDNKITKELSEEELITLRDEVSKYMIEGDLRRFNATNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK*
165
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Lja1g5142
164
ProSiteProfiles
Ribosomal protein S13 family profile.
47
153
IPR001892
GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142
164
PANTHER
30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18
1
163
-
-
Lja1g5142
164
Hamap
30S ribosomal protein S13 [rpsM].
44
160
IPR001892
GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142
164
SUPERFAMILY
S13-like H2TH domain
45
156
IPR010979
GO:0003676
Lja1g5142
164
ProSitePatterns
Ribosomal protein S13 signature.
129
142
IPR018269
GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142
164
PANTHER
37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL
1
163
IPR019980
GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142
164
Gene3D
-
45
113
-
-
Lja1g5142
164
TIGRFAM
uS13_bact: ribosomal protein uS13
46
155
IPR019980
GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142
164
Pfam
Ribosomal protein S13/S18
46
150
IPR001892
GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g5142
164
Gene3D
30s ribosomal protein s13, domain 2
114
164
IPR027437
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Lja1g5142
Lja-Chr1
74628578
74629632
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Lja1g5142
45
162
Cytoplasmic Ribosomal Protein Gene Family
AT4G09800
32.639
1.80e-07
46.6
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Lja1g5142
K02952
-
gmx:100499902
257.684
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Lja1g5142
1
74628578
74629632
Lja1g5142
1
74628578
74629632
ECH
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