Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5134 ATGCATCGGATTTTCGGCAATAGGAAGAAGACCACCGCCGCCACCGCCACCGCCGCCATGGATTCAAAGAAGCTCCGACGGAAACCCAAGCTCGAGCGCCGTAATGCACTCAAGTACTTTGAATACGATGCTGGATCGTCGTCTTCCTCGCTTGATGACTCCTCCGGCTCGCTGTATACTCGTTCCATGGAGCTTCACGACCGGACTAGCTTCCGGATTGAAGGAATTGAAGGCGAGTTTGATCGGATTTGCAAGAGTTTGGGGTTGTCCGGGCCGGAGGATTTCGCGATTCCCGCGGCGGCGTGGGAGGCTATGAAGGTTCGGTCGTCGTCGGATATTCTTCCGAGGTTGAAGCTGAACGAGCTCGATCTTCAGGAGAAGGTGGAAGAGGTGCGGAACGCGGTGGAGGGAGGTGAATTGAGTGAGAATTGTGTAGAGGGAGTTAGGGATAGGGTTAGGGATGAGGCTACTGAGACTACCGGGTGCTGCGGTGAGAGTGGTGGTGGTGGTGGGGGAATCAATGGGGTTCGTCCTCCGATGCTTAAGCCGCCGCCGGGGGTGAGGGTTCCGGTTGTTGACCACCACGCGTGTTCCACTTGGGACCTCTTTAGGGAATTGGCTCCGGTAGGTGAAGGGGTTTGTGAGGAAGAAGGAGGAAGAGTGGAGGAAGAAGGAGGAAGAGCGGAGGAAGAAGGAGGAGGGGAGGTTGGTAGTGTCAGTCCGAAGAGGGAAGAGGAACAGGGGGTGGGTGATGCAGAGAGGATTGCGGAGATTGATGCTGGGCTTTCGGAATCGAGTTCGTTTACCACGTCGAATGAAGGTGATTCTTCTAGCACGGATGTGTCTCCTAACACGAGAATCAAGCGTGTTATTACCACCGGTTGCTGGCAAAAGGGCGAGTTCCTGGGGGGTGGCTCGTTTGGGTCTGTCTATGAAGGAATTTCTGACGATGGATTCTTTTTTGCTGTCAAAGAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAACAAAGTGTCTTTCAACTGGAGCAGGAAATTGCACTTTTGAGTCGATTTGAACATGAAAATATAGTGCAATACTATGGCACTGAAATGGATGAATCAAAGCTGTATATCTTTCTTGAGCTTATAACTAAAGGTTCCCTTAGAAGCCTCTATCAAAGGTATACTCTTCGAGATTCCCAAGTATCTGGTTATACAAGACAGATTCTGCTTGGTTTGAAGTATCTTCATGAGCAAAATGTGATTCACAGGGATATTAAGTGTGCAAATATATTGGTGGATGCAAATGGATCTGTCAAGCTTGCAGACTTTGGATTAGCAAAGGCAACAAAATTAAATGACATTAAATCATGCAAGGGGACAGCATTCTGGATGGCCCCTGAGGTTGTGAAAGGAAAGAACAAAGGTTATGGGCTTCCAGCTGATATGTGGAGTCTAGGATGCACTGTGCTGGAAATGCTAACACGCCAAATTCCATACTCCAATATGGAACCGATGCAGGCCTTATTTAGAATTGGTAAAGGTGAGCGACCTCTTATTCCTGATTCTCTTTCAAGAGATGCACAGGATTTTGTCCTGCAGTGCCTTCAAGTTAATCCAGATGATCGGCCTACTGCTGCTCATCTCTTAAACCACCCATTTGTCCAAAGGCCACTTTCCCACTCTTCATTTCCTCACATGCATGACAGAAGGGGTTAA 1701 0.4903 MHRIFGNRKKTTAATATAAMDSKKLRRKPKLERRNALKYFEYDAGSSSSSLDDSSGSLYTRSMELHDRTSFRIEGIEGEFDRICKSLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLKLNELDLQEKVEEVRNAVEGGELSENCVEGVRDRVRDEATETTGCCGESGGGGGGINGVRPPMLKPPPGVRVPVVDHHACSTWDLFRELAPVGEGVCEEEGGRVEEEGGRAEEEGGGEVGSVSPKREEEQGVGDAERIAEIDAGLSESSSFTTSNEGDSSSTDVSPNTRIKRVITTGCWQKGEFLGGGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSVFQLEQEIALLSRFEHENIVQYYGTEMDESKLYIFLELITKGSLRSLYQRYTLRDSQVSGYTRQILLGLKYLHEQNVIHRDIKCANILVDANGSVKLADFGLAKATKLNDIKSCKGTAFWMAPEVVKGKNKGYGLPADMWSLGCTVLEMLTRQIPYSNMEPMQALFRIGKGERPLIPDSLSRDAQDFVLQCLQVNPDDRPTAAHLLNHPFVQRPLSHSSFPHMHDRRG* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5134 566 MobiDBLite consensus disorder prediction 214 284 - -
Lja1g5134 566 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Lja1g5134 566 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g5134 566 MobiDBLite consensus disorder prediction 262 284 - -
Lja1g5134 566 Pfam Protein kinase domain 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5134 566 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 148 556 - -
Lja1g5134 566 ProSiteProfiles Protein kinase domain profile. 296 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5134 566 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 129 - -
Lja1g5134 566 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 22 129 - -
Lja1g5134 566 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 148 556 - -
Lja1g5134 566 Gene3D Transferase(Phosphotransferase) domain 1 295 565 - -
Lja1g5134 566 SMART serkin_6 296 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5134 566 SUPERFAMILY Protein kinase-like (PK-like) 279 555 IPR011009 -
Lja1g5134 566 MobiDBLite consensus disorder prediction 215 253 - -
Lja1g5134 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5134 Lja-Chr1 74214258 74222472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5134 1 553 MAP Kinase Kinase Kinase AT4G08500 51.316 7.01e-173 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja1g5134 Pkinase 1.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5134 K13414 - gmx:100819999 763.066