Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5123 ATGGAAGGGAGCAAAGACCAGATTGTGGATGTGGGATCGGTGGTTGAATCCGTTTCTGCTGAAGATGGTGACGCCCCTCTTTACCAACTCGAAAGCCTCTGCATGCGTTGTCATCAAAATGGGACTACAAGACTTCTATTGACTATAATTCCAAATTTCAGAAAGATTTTGTTGTCGGCTTTTGATTGTCCTCATTGTGGTGAGAGGAACAATGAAGTTCAGTTTGCTGGCGAAATTCAACCGCGTGGTTGTTGTTACTCTTTGGAGATCCCATCAGGCAAACATAAGATGCTCAACCGGCAAGTGGTAAAATCAGAATCTGCGACCATTAAGATACCTGAATTGGAATTTGAGATACCACCAGAGGCTCAACGTGGTAGTCTGTCAACGGTGGAGGGGGTACTAACGCGAGCTGCTGATGGACTTCAGGCCCTTCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACAGCTGAAGCACTCGATCAATTCTTGGTGAAATTGCGAGCTTGTGCAACAGGAGAATCATCCTTCACATTTATTGTTGATGATCCTGCGGGAAACAGCTTCATTGAAAACCCGTTTGCACCAGCATCTGATCCATCACTGACTACCAAGTTTTATGAGCGAACTCCTGAGCAACAAACATTGTTGGGATATCTTGTTGATTCTACACCGATTGAAGGAACTCGTGGCGAAGCACCAGAAGGAGTAGAAGCTGTGGCTGGTAATCAAATGATGAGAGAACCACATGGGTCAGTGGGGGCAGCAGCTGGTCATCGAGCCATTGCACAAAGTAATAGTGCAGATATAGCAGAAGCATTATTTCGCTATACTGCACCAGAAGAGGTGATGACTTTCCCATCTACCTGTGGTACCTGTGCCAGTAGTTGCGAGACTCGAATGTTCGTCACCAATATTCCATACTTCCAAGAAGTAATTGTAATGGCATCCACATGCGATGCTTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGCCGAATTCCTGAAAAAGGAAAAAAGATTACTCTCTATGTGAAAAATGTTAATGACCTGAGCCGAGATGTAATAAAGTCTGATACAGCAAGTGTAAAAATTCCTGAACTTGAGTTGGAGCTGGCAAGTGGCACCCTGGGAGGACTTGTCACAACTGTTGAAGGTTTAATTTCAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGCCTTGATCAAGATAGAAAAAGCAAATGGATAGACTTCAAAGCAAGGCTAGACAAGCTTCTTAGCTTGGAAGAAGCATGGACTCTAGTTCTTGATGATGCATTAGCCAATTCTTTTATAGCACCTGCAACTGATGATCTAAAAGACGACAATCAATTAACATTTGAGGAATATGAGAGGTCGTGGGAGCAAAATGAAGAATTGGGTCTGAATGATATTGACACATCCAGTGCTGATGCTGCTTATGAATCAACAAATACTACTAAAAATGAGTGA 1494 0.4351 MEGSKDQIVDVGSVVESVSAEDGDAPLYQLESLCMRCHQNGTTRLLLTIIPNFRKILLSAFDCPHCGERNNEVQFAGEIQPRGCCYSLEIPSGKHKMLNRQVVKSESATIKIPELEFEIPPEAQRGSLSTVEGVLTRAADGLQALQEERRKVAPETAEALDQFLVKLRACATGESSFTFIVDDPAGNSFIENPFAPASDPSLTTKFYERTPEQQTLLGYLVDSTPIEGTRGEAPEGVEAVAGNQMMREPHGSVGAAAGHRAIAQSNSADIAEALFRYTAPEEVMTFPSTCGTCASSCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKKITLYVKNVNDLSRDVIKSDTASVKIPELELELASGTLGGLVTTVEGLISKISESLERVHGFTFGDSLDQDRKSKWIDFKARLDKLLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEQNEELGLNDIDTSSADAAYESTNTTKNE* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5123 497 Gene3D ZPR1, zinc finger domain 278 333 IPR042452 -
Lja1g5123 497 Gene3D ZPR1, zinc finger domain 24 77 IPR042452 -
Lja1g5123 497 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 4 490 - -
Lja1g5123 497 PANTHER ZINC FINGER PROTEIN ZPR1 4 490 IPR040141 -
Lja1g5123 497 Gene3D ZPR1, A/B domain 78 219 IPR042451 -
Lja1g5123 497 Gene3D ZPR1, A/B domain 334 476 IPR042451 -
Lja1g5123 497 MobiDBLite consensus disorder prediction 472 497 - -
Lja1g5123 497 SMART zpr1 32 192 IPR004457 GO:0008270
Lja1g5123 497 SMART zpr1 288 448 IPR004457 GO:0008270
Lja1g5123 497 MobiDBLite consensus disorder prediction 474 497 - -
Lja1g5123 497 Pfam ZPR1 zinc-finger domain 288 446 IPR004457 GO:0008270
Lja1g5123 497 Pfam ZPR1 zinc-finger domain 32 191 IPR004457 GO:0008270
Lja1g5123 497 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 34 214 IPR004457 GO:0008270
Lja1g5123 497 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 289 480 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5123 Lja-Chr1 74078816 74089644 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5123 1 495 C2H2 Transcription Factor Family AT5G22480 73.589 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5123 K06874 - gmx:100798741 865.144