Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5120 ATGGAAGGGAACAAAGAGCAGATTGTGGATGTTGGATCGGTGGTTGAATCTGTTTCTGCTGAAGATGGTGACGCCCCTCTTTACCAACTCGAAAGCCTCTGCATGCGCTGTCATCAAAATGGAACTACAAGAATTTTATTGACTATAATTCCAAATTTCAGAAAGATTTTGTTGTCCGCTTTTGATTGTCCTCATTGTGGTGAGAGGAACAATGAAGCTCAGTTTGCTGGTGAAATTCAACCGCGTGGTTGTTGTTACTCTTTGGAGATCCCATCAGGCGAACATAAGATGCTCAATCGACAAGTGGTAAAATCTGAATCTATACCTGAATTGGATTTTGAGATACCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAGGGGGTACTAACGCGAGCTGCTGATGGACTTCAGGCCCTTCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACAGCTGAAGCACTTGATCAATTCTTGGTGAAATTGCGAGCTTGTGCAACAGGAGAATCGTCCTTCACATTTGTTCTTGATGATCCTGCGGGAAACAGCTTCATTGAAAACCCGTTTGCACCAGCATCTGATCCATCACTGACTACCAAGTTTTATGAGCGAACTCCTGAGCAACAAGCATTGTTGGGATATCTTGTTGATTCTACACCGGTTGAAGGAACTCGTGGCGAAGCACCAGAAGGAGGAGAAGCTGTGGCTGCTAATCAAATGACGAGAGAACCACATGAGTCAGTGGGGGCAGCAGCTGGTCATCGAGCCATTGCACAAAGTAATAGTGCAGATATAGCAGACGCGTTATTTCGATATACTGCACCAGCAGAGGTGATGACTTTCCCATCTACCTGTGGTACTTGTGCCAGTAGTTGCGAGACTCGAATGTTTGTCACCAATATTCCATACTTCCAAGAAGTAATTGTAATGGCATCCACATGCGATGCTTGTGGCTACCGCAACTCTGAGGTGAAACCAGGTGGCCAAATTCCTGAAAAAGGAAAAAAGATTACTCTCTATGTGAAAAATGCTAATGACCTGAGCAGAGATGTAATAAAGTTTCTGGGAGGACTTGTCACAACTGTTGAAGGTTTAATTTCACAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGCCTTGATCAAGATAGAAGAAGCAAATGGATAGACTTCAAAGCAAGGCTAGACAAGCTTCTTAGCTTGGAAGAAGCATGGACTCTAGTTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTAAAAGACGACAATCAATTAACATTTGAGGAATATGAGAGGTCCTGGGAGCAAAATGAAGATTTGGGTCTGAATGATATTGACACATCCAGTGCTGATGCAGCTTATGAATCAACAAATACTACTAAAAACGAATGA 1428 0.4349 MEGNKEQIVDVGSVVESVSAEDGDAPLYQLESLCMRCHQNGTTRILLTIIPNFRKILLSAFDCPHCGERNNEAQFAGEIQPRGCCYSLEIPSGEHKMLNRQVVKSESIPELDFEIPPEAQRGSLSTVEGVLTRAADGLQALQEERRKVAPETAEALDQFLVKLRACATGESSFTFVLDDPAGNSFIENPFAPASDPSLTTKFYERTPEQQALLGYLVDSTPVEGTRGEAPEGGEAVAANQMTREPHESVGAAAGHRAIAQSNSADIADALFRYTAPAEVMTFPSTCGTCASSCETRMFVTNIPYFQEVIVMASTCDACGYRNSEVKPGGQIPEKGKKITLYVKNANDLSRDVIKFLGGLVTTVEGLISQISESLERVHGFTFGDSLDQDRRSKWIDFKARLDKLLSLEEAWTLVLDDALANSFVAPATDDLKDDNQLTFEEYERSWEQNEDLGLNDIDTSSADAAYESTNTTKNE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5120 475 Gene3D ZPR1, A/B domain 78 215 IPR042451 -
Lja1g5120 475 Gene3D ZPR1, A/B domain 330 454 IPR042451 -
Lja1g5120 475 Gene3D ZPR1, zinc finger domain 275 329 IPR042452 -
Lja1g5120 475 Gene3D ZPR1, zinc finger domain 24 77 IPR042452 -
Lja1g5120 475 PANTHER ZINC FINGER PROTEIN ZPR1 3 472 IPR040141 -
Lja1g5120 475 Pfam ZPR1 zinc-finger domain 284 354 IPR004457 GO:0008270
Lja1g5120 475 Pfam ZPR1 zinc-finger domain 357 424 IPR004457 GO:0008270
Lja1g5120 475 Pfam ZPR1 zinc-finger domain 32 187 IPR004457 GO:0008270
Lja1g5120 475 MobiDBLite consensus disorder prediction 449 475 - -
Lja1g5120 475 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 34 209 IPR004457 GO:0008270
Lja1g5120 475 MobiDBLite consensus disorder prediction 452 475 - -
Lja1g5120 475 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 3 472 - -
Lja1g5120 475 SMART zpr1 284 426 IPR004457 GO:0008270
Lja1g5120 475 SMART zpr1 32 188 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5120 Lja-Chr1 74016897 74035524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5120 1 473 C2H2 Transcription Factor Family AT5G22480 69.153 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5120 K06874 - gmx:100798741 812.757