Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5118 ATGCTCTCGTTATTGTGTTTGTGGTTGTTGCCGGCGATGACCGAGGACCGATGTTACCGGAGGAAGACCATGGCGGGGGAAGAGGACGACGTTGTTGCCGCTGAGAGGCCGTTACCGGCGCGGCGGCCGGAGATTCATGACGGCGGCGGAGGCTCCGCCGCGTTGAGGATGGATTATTTTTCGCAGGCGAGGAAAGCGCTTAGCGAGCGGTCGCCTTTTGATTTGCCCGGGGAACCGTCAACTTCTGCGGTGGTTACTCTGCCGAGTGGGCTGGCGAGTTTGCTGAACCGTCATGGTGATAGCCGGAGGCGGCACAAGAAGTCTCAGTCTGGTGGCGGTGAGAAGAAGAAGAAGAAGTCGTCTAGGGCGAACGACAAGTCGCGAGTTCGCAACATTTGGGTGGAGACTGAGGAGTATTTCAGGGACCTTACATTGGCTGATATTGATACATTGGTTGAGTTATCTTCGTGTTCTAGTTTAGCTTCTCGTGAGTGTTTCACTATTCCGCGTTTGGGTGGTGCTAAGAGGTTCAATGTGGTTAGTACTAGTTGTGTGGATGAAAAGAACCCTGCTCCAACGGGATTCAATATAGTTAGTTGTGAGGAAGGTAAGAAGGATGGCGAAGAATTGAAAAATGAGGACGGTTTGTTGGGAGTTGAGTCGATTGACAATGTCGTTGCTGCTGAGACCGCTTTGCCTCAGGATGACAAGAATGGAAATGCTTCTGATTCTTGTGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCTTCAACTACTGAGCGCCCTCGCAAGAGAAGGAAGCTTTTGGGTGGTGATGCTGGTTTGGAGAGAGTTTTGATGACTAGTCCATCTGATGGGAACCAGCCATTTTGTCATTATTGTGGCAAGGGGGACATTGGCACTGGCAGAGAGTCTCACAGGTTAATCGTCTGCGCTTCTTGTAAAGTTGCAGTTCATCGAAAGTGCTATGGTGTGCAAGATGAAGATGTAGATGAGTCTTGGTTGTGCTCTTGGTGTAAGCAAAAGGGTGATGTTGGTGACTCCGTGAATCCTTGTGTTCTTTGCCCAAAGAAGGGAGGCGCTTTAAAACCACTTAATAGCAGCGGGGAAGGTGATGGGTCTACCCAGTTTGTGCACTTGTTTTGTTGTCTGTGGATGCCCGAGGTCTATGTAGATGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGAAGCGTCAAAAAAACCCGGAGTAAATTAGTATGTAATGTTTGCAAAATGAAGTGTGGCACATGTGTTCGATGTAATCATGGAGCCTGCAGAACATCTTTCCATCCTCTATGTGCAAGGGAAGCTAGACAGAGAATGGAGGTTTGGACAAAGTATGGTAATGACAATGTTGAGTTGCGGGCATTTTGCTTGAAACACTCAAATCTACAAGAGGATAGAAGTATCTTGCCACTGGGAGGCCGCTCTATTGCAGCTGGCGGTGACTTTTCAGAAGCCAATGACCTTCCAGTATCACTGCCAGTGAGCAGTGAACACAATGTGAAAATTGTTTGTGATAATGGAGGGTTAGTGTCTAATAGTATTCCAGACAAGTTGAACCATAATGGTGTACCGCCTGATGATGGTGCTTTTCCACAACATGATATTGGAGTTACAGGGAAAACTAATGAGCATGTTGATGGATCTGACTCCCTCAGTTTTGTCCTTGTTTTGAAGAAGTTGATAGATAGAGGAAAAGTTGACGTAAAAGATGTAGCCTTGGAGATTGGCATTTCATCAGATGCATTGGCTGCAAATATCAATGAAGCATGTATGGACCCTGATGTGCAACACAAGATAGTCAATTGGCTAAAAGCCCATGTACATACTAGTGCATTTCAGAAAGGTTTAAAATTCAAATTGAAACCAGCCAATGCATTCAACGATGAAAATGCAGCCCAAGATGGTTCTGATACTTTACCAATATCAGATTCAGGTTTACTGGATCCAGTTGCTGTTAAGTCAGTGCCACCAAGGAGAAGAACTACCAGTAATATTAGGGTTTTGAATGATGATAAAGTAATATGTTCATCTGAGGGAGTTGCTAGTGAGAATGGGATGCCAATTGATAAGTTCGGAGTAGGTCATCCTGACAGTGAAAATCCAGGAAGTTCCAATGAAGAATCCATTCATGATGCCACTGGAATGAATACAACCAAGTCTGAGGATACTTTTCAAGAAGTTCAAGTCAATCTTGATGAACACTTCAAATCCAGCTTGTCTGGTTGTTTTTCAGAAGAAAAGTCTACTGTCTGCTTGCAGAATGCCTTGATGATTTCTGATCAGCACTGTCCTGGACATTCTGCATCAGAACCACCTGATTCTGGTTTCATAAAGATCGAAGCAATGTCTAGTTACATTCACCCGCAGATCAACAAGAAATTGCTGCGGGTTCGTGATGGGTTGCCCTTGGAGGATGTTGTAGGTTCAAGTGACAAGGGAAATTCTTCTTTCATAGAATCCTCTGGTGCTAGTGGCTGCTCAAGTAGCCAAGATCTCGAATTAACTTGTAGTGACAAATCCGAGCCTGATCGAGTAAAGATGGACCAGTTGGCTAGGGATGAAAAAGTGGGACTTTGGGATTTTTCTCCAGAAGATGAATTGGAGGGGGAACTTATATATTTTCAGCATAAATTGTTGCAAAATGCAGTTGCAAAAAAGAGGCTTACTGATAACTTGATCTACAATGTTGCTAAAAGTCTGCCACAGGATATTGATAATGCACATCAGCAAAGATGGGATGCTGTTACTGTTAATCAATATCTACGTGATCTTCGGGAGGCAAAAAAGCAGGGAAGGAAAGAAAAGAGGCACAAGGAGGCACAGGCCGTATTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTTCCAGAGTCTCTTCTTTCCGAAAAGACACCTTAGATGAAGCCGTTCAACATGAGAATCTCATAAAGTTGGATACTTCAAGTGGGCGGACTGGTGCTTGTTCGCAGCCAATGCCACGAGCAAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCATCTGATAAATATTCAGATTTTTGCCCACCAACCTCAGACTTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGATTATGTGAGACTATGTTAAAACATATCCTAGTCTGCTCTGGTTGTAAGGTTGCAGTGCACTTGGATTGCTATCGTAGTGTGGAAGGAACAATGGGTCCTTGGTACTGTGAATTATGTGAAGAGTTATCATCTAGAAGTTCCGGGGGATCTGCTATAAATTTCTGGGAGAAGCCTTATTTTGTCGCAGAATGTGCTCTATGTGGAGGTACTTCTGGTGCCTTTAGGAAGTCTTCGGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGGTGTTTGAGTCTACATTCAAAAGAGGACAAATAGATGCTGTTGGAGGACTGGAGACTGTGCCAAAAGGCGTCGATATGTGTTGTATCTGCCGCCGGAAGCATGGTGTATGCATGAAGTGTTGCTTTGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGAATGTGAGGACTGTTGGTGGCAAGCTGCAACACAAAACTTATTGTGAAAAGCATAGTTTGGAGCAGAAGGCAAAGGCTGAAAGTCAAAAACATGGAATAGAGGAATTAAAAAGTCTCAAGCATATTAGGGTTGAACTTGAGAGATTACGTCTCCTTTGCGAAAGAATTGTCAGACGTGAAAAAACTAAGCGGGAATTGGTTCTATGCTCACATAAAATACTTGCCTTTCGAAGAGATGAGGCTGCTAGGTCAGTGCTGGTTCGTGGTCCTTTCGTCCTTCCAGATGGTAGTTCTGAATCAGCTACGACATCCCTTAAAGCAAACACAGAGGGATACAGATCGTGTAGTGAAGCACTCCAAAGATCAGATGACATAACTGTTGACAGCTCAGTTTCTGCTAAGCATCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGATTGCTCAACCTCTCAGAGTCGCTATAACCACCACAAGATTCCAGAGAGGATGCAATTTGCGGGCAAACAGATTCCTCATAGAGCTTCTGCTACATCACGGAATATTTCAGATGAGGGTGGATGGATACCCCCCAAATCTAGAAAGTCTTCTGAGACATTTGGAAAAGAGATTATTATGACCTCAGATGAAGCTTCTATGAAGAACTCAAGGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGTCTAAAGAGGATACATATGCTGATGAACCAGTGGATCATGACAGATAG 4359 0.4441 MLSLLCLWLLPAMTEDRCYRRKTMAGEEDDVVAAERPLPARRPEIHDGGGGSAALRMDYFSQARKALSERSPFDLPGEPSTSAVVTLPSGLASLLNRHGDSRRRHKKSQSGGGEKKKKKSSRANDKSRVRNIWVETEEYFRDLTLADIDTLVELSSCSSLASRECFTIPRLGGAKRFNVVSTSCVDEKNPAPTGFNIVSCEEGKKDGEELKNEDGLLGVESIDNVVAAETALPQDDKNGNASDSCVSLEWFLGCRNKVSSTTERPRKRRKLLGGDAGLERVLMTSPSDGNQPFCHYCGKGDIGTGRESHRLIVCASCKVAVHRKCYGVQDEDVDESWLCSWCKQKGDVGDSVNPCVLCPKKGGALKPLNSSGEGDGSTQFVHLFCCLWMPEVYVDDLKKMEPVMNVGSVKKTRSKLVCNVCKMKCGTCVRCNHGACRTSFHPLCAREARQRMEVWTKYGNDNVELRAFCLKHSNLQEDRSILPLGGRSIAAGGDFSEANDLPVSLPVSSEHNVKIVCDNGGLVSNSIPDKLNHNGVPPDDGAFPQHDIGVTGKTNEHVDGSDSLSFVLVLKKLIDRGKVDVKDVALEIGISSDALAANINEACMDPDVQHKIVNWLKAHVHTSAFQKGLKFKLKPANAFNDENAAQDGSDTLPISDSGLLDPVAVKSVPPRRRTTSNIRVLNDDKVICSSEGVASENGMPIDKFGVGHPDSENPGSSNEESIHDATGMNTTKSEDTFQEVQVNLDEHFKSSLSGCFSEEKSTVCLQNALMISDQHCPGHSASEPPDSGFIKIEAMSSYIHPQINKKLLRVRDGLPLEDVVGSSDKGNSSFIESSGASGCSSSQDLELTCSDKSEPDRVKMDQLARDEKVGLWDFSPEDELEGELIYFQHKLLQNAVAKKRLTDNLIYNVAKSLPQDIDNAHQQRWDAVTVNQYLRDLREAKKQGRKEKRHKEAQAVLAAATAAAAASSRVSSFRKDTLDEAVQHENLIKLDTSSGRTGACSQPMPRAKETLSRVAVTRTSSDKYSDFCPPTSDFSKEQRKSCDICRLCETMLKHILVCSGCKVAVHLDCYRSVEGTMGPWYCELCEELSSRSSGGSAINFWEKPYFVAECALCGGTSGAFRKSSDGQWVHAFCAEWVFESTFKRGQIDAVGGLETVPKGVDMCCICRRKHGVCMKCCFGHCQTTFHPSCARSAGLFMNVRTVGGKLQHKTYCEKHSLEQKAKAESQKHGIEELKSLKHIRVELERLRLLCERIVRREKTKRELVLCSHKILAFRRDEAARSVLVRGPFVLPDGSSESATTSLKANTEGYRSCSEALQRSDDITVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSRYNHHKIPERMQFAGKQIPHRASATSRNISDEGGWIPPKSRKSSETFGKEIIMTSDEASMKNSRLPKGYAYVPADCLSNDKQSKEDTYADEPVDHDR* 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5118 1452 Coils Coil 934 954 - -
Lja1g5118 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1031 1091 IPR013083 -
Lja1g5118 1452 ProSiteProfiles Zinc finger PHD-type profile. 291 345 IPR019787 -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 821 853 - -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 1430 1452 - -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 95 126 - -
Lja1g5118 1452 SMART PHD_3 1041 1086 IPR001965 -
Lja1g5118 1452 SMART PHD_3 1162 1216 IPR001965 -
Lja1g5118 1452 SMART PHD_3 417 473 IPR001965 -
Lja1g5118 1452 SMART PHD_3 293 343 IPR001965 -
Lja1g5118 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 475 IPR013083 -
Lja1g5118 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1107 1217 IPR013083 -
Lja1g5118 1452 SUPERFAMILY FYVE/PHD zinc finger 1018 1086 IPR011011 -
Lja1g5118 1452 ProSitePatterns Zinc finger PHD-type signature. 294 342 IPR019786 -
Lja1g5118 1452 SUPERFAMILY FYVE/PHD zinc finger 283 344 IPR011011 -
Lja1g5118 1452 PANTHER PHD FINGER PROTEINS 240 481 - -
Lja1g5118 1452 Pfam PHD-finger 311 343 - -
Lja1g5118 1452 Pfam PHD-finger 1055 1086 - -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 1376 1403 - -
Lja1g5118 1452 ProSiteProfiles Extended PHD (ePHD) domain profile. 1107 1216 IPR034732 -
Lja1g5118 1452 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 240 481 - -
Lja1g5118 1452 CDD ePHD 1110 1215 - -
Lja1g5118 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 350 IPR013083 -
Lja1g5118 1452 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 1031 1082 IPR002219 -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 1434 1452 - -
Lja1g5118 1452 Pfam PHD-zinc-finger like domain 1109 1215 - -
Lja1g5118 1452 Pfam PHD-zinc-finger like domain 354 472 - -
Lja1g5118 1452 ProSiteProfiles Extended PHD (ePHD) domain profile. 352 473 IPR034732 -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 99 113 - -
Lja1g5118 1452 MobiDBLite consensus disorder prediction 822 848 - -
Lja1g5118 1452 PANTHER PHD FINGER PROTEINS 749 1441 - -
Lja1g5118 1452 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 749 1441 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5118 311 477 C2H2 Transcription Factor Family AT3G14740 28.994 1.88e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5118 - - gmx:100775631 1981.84