Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5112 ATGTTTGAAAACCAAAACCCTAAACCATTCATTCATTCACACTCTCTCGTAACGATTTCAGAATCGTGTGAAGCAAGATTCATTCATTCAATCATGCCTCGCCAACTGCCGCCACCGCCTCCGGTTCCCAACCGCCGTCTCGACCCCAAAATCTGGCGAGCATGTGCCGGCGCCGCCGTCCAGATTCCAACTCTCAATTCTAGGGTTTACTACTTCCCGCAGGGGCACATGGACCAGGCTTCGTCACCTCCTCAGCACCTTTCTCATCGCTTGGTTTCCCGGCCGATGATTCTCTGCCGCGTCACCGCCGTGCAGTTTCTCGCCGATCATCTCACGGATGAGGTTTTCGCGAAGCTTGTTCTGCATCCGGTTACGGAGTCGCCGCAGCGGTTTCCGCTGCCGAGTGAGGATGACGGCGGTGAGAAGGTTGTGTCGTTTGCGAAGATTTTGACTCCGTCGGATGCTAACAACGGCGGTGGCTTCTCTGTGCCGAGGTTCTGCGCTGATTCAATCTTCCCGGCGCTTGACTACCAGGCGGACCCGCCGGTGCAGAATCTGATTATCACTGATGTTCACGGCGTGGCGTGGGAGTTTCGGCACATTTACCGCGGGACTCCGAGGCGGCACCTGCTTACTACCGGGTGGAGCAAGTTCGTTAACAGCAAGAAGCTCGTCGCCGGCGACTCTGTCGTGTTCATGAAGAACCCCAGGGGGGAGATGTTTGTTGGACTCCGCCGCGCCTCTCGGTTTGCCGGCGGCGGCGACGGGGCCAGGCGGAGTTTTCCGATCGGCGTGGTGAGGAGCAGGGTGGAGGAGGAGGAACCGCCGCAGGAGGAGAGGAGCAAGGAGGGATTCTCGAGGAACGGGAAGGGGAAGCTGTCGCCGAAGTCGGTTGCGGAGGCGATGGAGTTGGCTGCACAGGATATGCCGTTCGAGGTGGTGTATTATCCGAAGGCTGGGTGGTCCGATTTTGTGGTGAAGGCGGAGGCTGTGGAGGAAGCGATTCGTGTTAGGTGGAGCCCTGGGATGAGGGTGAAAATGGCTGTGGAGACTGATGATTCGTCCAGGTTGACCTGGTTTCAGGGAATGGTCTCTTCGGTCAGTTTTTCTGATAATGCCCCTTGGCCACGCTCCCCTTGGCGTATGCTTCAGATCACATGGGATGAACCTGAAGTGTTGCAGACTTCCAAGTGGGTCAGCCCTTGGCAGGTCGAACAGGTGTCTACCACACCTGGACTTCATACTGTTTTCCCTCCAACAAAAAGGTTCAAAGCTGCTCAGGGTTCTGGGATGTTCGCTGATGGAGAGGGAGACCCCTTTTCTATGACAAGATTCACTAATTCAACAATGGGACACTTGAATCAAACATTGTTGAATTATGGTATTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTTCATCAAGTTTTTCCAACTTTCCAAGTGACAACTCTCACTTGTATATGGGTAATTCCTTTGGGAGCAACACAGTGCCCAGGTTGCATGCTTTGTCAACCGAGCTAAATGTCGGCAGCTCTCAATCTGGCGACTTGTCACCAGATAGCCATAGTAGTCTGCATTCCTTGGGAACAGACTCTGTTAGGAACCAGAACAGCAACTCAGCTAAACCTGGGTCTTTTTCATTTCAGCTATTTGGTGCAATCATTCATACAAAACAGCCTGATGAAAGTGGTTCACAGGGTACTGGTTGTACAGGAGATGATAGCAGCAAGGGCAACGAAACTGAAGGCATTGACAACCCGCTGGATGATTCTTTGACTTACTCAAAATTGCTTGACAGGCTTGATAGCCAATGCCAAAGAGCCTCGACTGTGGAGGCATGTTATTTGTGA 1863 0.5303 MFENQNPKPFIHSHSLVTISESCEARFIHSIMPRQLPPPPPVPNRRLDPKIWRACAGAAVQIPTLNSRVYYFPQGHMDQASSPPQHLSHRLVSRPMILCRVTAVQFLADHLTDEVFAKLVLHPVTESPQRFPLPSEDDGGEKVVSFAKILTPSDANNGGGFSVPRFCADSIFPALDYQADPPVQNLIITDVHGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFMKNPRGEMFVGLRRASRFAGGGDGARRSFPIGVVRSRVEEEEPPQEERSKEGFSRNGKGKLSPKSVAEAMELAAQDMPFEVVYYPKAGWSDFVVKAEAVEEAIRVRWSPGMRVKMAVETDDSSRLTWFQGMVSSVSFSDNAPWPRSPWRMLQITWDEPEVLQTSKWVSPWQVEQVSTTPGLHTVFPPTKRFKAAQGSGMFADGEGDPFSMTRFTNSTMGHLNQTLLNYGIFPAGMQGARHDLFSSSSFSNFPSDNSHLYMGNSFGSNTVPRLHALSTELNVGSSQSGDLSPDSHSSLHSLGTDSVRNQNSNSAKPGSFSFQLFGAIIHTKQPDESGSQGTGCTGDDSSKGNETEGIDNPLDDSLTYSKLLDRLDSQCQRASTVEACYL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5112 620 SUPERFAMILY DNA-binding pseudobarrel domain 142 264 IPR015300 -
Lja1g5112 620 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 619 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g5112 620 MobiDBLite consensus disorder prediction 562 592 - -
Lja1g5112 620 MobiDBLite consensus disorder prediction 512 544 - -
Lja1g5112 620 MobiDBLite consensus disorder prediction 267 289 - -
Lja1g5112 620 MobiDBLite consensus disorder prediction 267 294 - -
Lja1g5112 620 MobiDBLite consensus disorder prediction 563 581 - -
Lja1g5112 620 PANTHER AUXIN RESPONSE FACTOR 40 619 - -
Lja1g5112 620 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Lja1g5112 620 CDD B3_DNA 145 242 IPR003340 GO:0003677
Lja1g5112 620 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Lja1g5112 620 Gene3D - 338 411 - -
Lja1g5112 620 Pfam Auxin response factor 301 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g5112 620 SMART B3_2 146 248 IPR003340 GO:0003677
Lja1g5112 620 Gene3D - 143 247 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5112 Lja-Chr1 73876962 73882487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5112 42 599 B3 DNA Binding Superfamily AT1G77850 48.687 2.14e-171 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g5112 B3 9.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5112 - - lja:Lj1g3v0748030.1 864.374