Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5105 ATGGATATATATGAGCCATTCCAGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATGAGAGCTTGAATTCAATTGCTTCCCCAATGTTACTGGTGAACAACACTAGCATAGAGCCCAAGTCTGAATATATTCTTCATGGACCAAGGGAGCCTTCTGGAGCTGATCAAGAGACTAAGAATAAAGATGTTAAGGTGGTAAAGCGTCTTGCTCAGAATCGAGAGGCTGCTAGGAAATGCCGGCTGCGGAAAAAGGCTTATGTTCAACAATTAGAAACAAGTCGATTGAAGCTCATGCAATTAGAGCTGGAGATTGTGAAAGCAAGAAAGCAGGGTATGCACATTGGCAATGTATTAGATACCAGTTACATGGGATCACCAGAAACCATCAACCCAGGGATTGTTGCGTTTGAAATCGAATATGGACAATGGGTTGAAGAGCAACATAGACGGAATGAAGAACTTAGAACAGCATTTCAGACTGATGCATCTGAAGTACAGCTCCGGCTACTTGTTCAGAGCATCTTGAACCATTACGCGAATCTTTGCAGAATGAAAGAATATGCTGCAAAAGCTGATGTACTCTATTTACTCTCCGGCATGTGGAAAGCGTCAGTGGAGCGCATCTTCCTTTGGATTGGAGGATCCCGCCCCTCGCAGCTTCTAAATCTCATTGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGCTAGCATCAACAACCTTCGCCTATCGTCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGATAAACTCCAGCAGAGTCTCGTCCACGACATGGCGGTTGACCCATTGGTTGCAGGAAACTTTGGAATCCAGATGGCTATTGCCATTGAGAAATTTGAGGCACTAGAAAATTTTGTAAACCAGGCAGATCACCTTCGGCAGCAAACTCTGCTGCACATGTCGCGCATCCTGTCGACTAACCAAGCTGTTCGAGGCTTGCTAGCTCTTGGAGAATACTTTCATCGTCTTCGTGCTCTTTGTTCTCGTTGGAATGAACGTTCATGTGACTCCATGTCACCTAAGATTGCTCCATAG 1068 0.4485 MDIYEPFQQVSMWGDSFKVDESLNSIASPMLLVNNTSIEPKSEYILHGPREPSGADQETKNKDVKVVKRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIVKARKQGMHIGNVLDTSYMGSPETINPGIVAFEIEYGQWVEEQHRRNEELRTAFQTDASEVQLRLLVQSILNHYANLCRMKEYAAKADVLYLLSGMWKASVERIFLWIGGSRPSQLLNLIVPQLEPLTDQQIASINNLRLSSQQAEDALSQGLDKLQQSLVHDMAVDPLVAGNFGIQMAIAIEKFEALENFVNQADHLRQQTLLHMSRILSTNQAVRGLLALGEYFHRLRALCSRWNERSCDSMSPKIAP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5105 355 SMART brlzneu 61 121 IPR004827 GO:0003700|GO:0006355
Lja1g5105 355 Pfam bZIP transcription factor 62 93 IPR004827 GO:0003700|GO:0006355
Lja1g5105 355 Coils Coil 84 111 - -
Lja1g5105 355 PANTHER TRANSCRIPTION FACTOR TGA9 1 347 - -
Lja1g5105 355 SUPERFAMILY Leucine zipper domain 65 98 IPR046347 GO:0003700|GO:0006355
Lja1g5105 355 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Lja1g5105 355 Gene3D - 65 117 - -
Lja1g5105 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Lja1g5105 355 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Lja1g5105 355 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5105 Lja-Chr1 73603174 73607079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5105 1 344 Calmodulin-binding Proteins AT1G22070 56.354 1.53e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja1g5105 DOG1 5.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5105 K14431 - gmx:100794268 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5916 1 108195040 108199753 Lja1g5105 1 73603174 73607079 PCT