Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5104 ATGAGCAAAACCCAAACCCAAAGAAAACCAATCATCACCAAGCATGTCAGAGAAAACCAAAAGCCACAGAAATCAGAGAAACAACCTTCATGGGTAAGAGGGTTATTGGCTTGTAGAAATGTTGAAGTCCAACAGCAACATCACCAGCAGCAGCAGCAGCAGCAGCAGAAGGAAGCTAAACCGCAACCGCAACCGCGACCGCAGGAAGCGAAACAACTAAGGAAGAAGGAGGAGCAGAGGAAGGTGAAAGAGGAACGCGCCGCCCCGGAAGAAAACAGCAACAAGAAATACAAGAAGATGAAGTGTTCAGGTTCATTATGTAACAACGCTGGGGTCATGGCAAAGCCTGTAACAGGAACAGGAACAGCAACAACACAAGATGTTCAGAAGAAAAAGAACACTGATGGTTCTAGCAGATCCATGAAGGCTCCTCTGGCTGAAATCAATGGACCTGTGTCAGATTCATCTTCTTCATTGTCAGCAGCATCTTCTAATTCTTCTGGTGGTGGGTCTTTCAGAGCAATACCATTCAGGAGGCTCTCCGGTTGTTACGAGTGCCGAATGGTTGTAGACCCTGTTCTTGGTTTCACAAGAGACCCTTCTCTGAGGAGTAGCATTTGTTCTTGTCCTGATTGTGGTGAGATCATGAAAGCTGAAAGCTTGGAACATCACCAAGCTGTCAAACATGCAGTGTCAGAGCTGGGACCAGAAGACACAAGCAAAAACATAGTTGAAATCATATTCCACTCTAGCTGGCTAAAGAAGCAATCACCAGTGTGCAAAATCGACCGCATCCTGAAGGTCCACAACACACAGAGGACAATCACCAAATTCGAAGAATACAGAGACTCCATCAAAGCTAAAGCAACGAAGCTCCCAAAGAAACACCCACGTTGCATAGCAGATGGCAACGAGCTGCTACGCTTCCACTGCACCACTTTTGTCTGCTCCTTAGGCCTCAACGGCTCCTCCAACATCTGCAACTCAACGTCGCAGTGCAACGTGTGCAGTGTGATCAAGCACGGGTTCAAGTTCAACAGAGGAGGAGGAGGGAGCGGGATCTTGACGACCGCGACCAGTGGGAAGGCCCACGACAAAGCGAGCATTGCGCCGGAGGATGATAATGACAAGAGGGCAATGCTGGTTTGTCGGGTGATAGCTGGCAGGGTGAAGAAGAACACGGAAGGTGGCAGCGGCATGATGGAGGAGGAGTATGATTCTGTTGCAGGGGATGTTGGAGCCTATTCTAATTTGGATGAGTTGTATGTGTTCAATCCTAGAGCTATATTGCCTTGCTTTGTTGTCATCTATAGGGACTATTGA 1323 0.48 MSKTQTQRKPIITKHVRENQKPQKSEKQPSWVRGLLACRNVEVQQQHHQQQQQQQQKEAKPQPQPRPQEAKQLRKKEEQRKVKEERAAPEENSNKKYKKMKCSGSLCNNAGVMAKPVTGTGTATTQDVQKKKNTDGSSRSMKAPLAEINGPVSDSSSSLSAASSNSSGGGSFRAIPFRRLSGCYECRMVVDPVLGFTRDPSLRSSICSCPDCGEIMKAESLEHHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQRTITKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTFVCSLGLNGSSNICNSTSQCNVCSVIKHGFKFNRGGGGSGILTTATSGKAHDKASIAPEDDNDKRAMLVCRVIAGRVKKNTEGGSGMMEEEYDSVAGDVGAYSNLDELYVFNPRAILPCFVVIYRDY* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5104 440 Gene3D - 230 439 - -
Lja1g5104 440 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 52 438 - -
Lja1g5104 440 MobiDBLite consensus disorder prediction 1 96 - -
Lja1g5104 440 MobiDBLite consensus disorder prediction 150 170 - -
Lja1g5104 440 SUPERFAMILY ADP-ribosylation 231 439 - -
Lja1g5104 440 Coils Coil 40 60 - -
Lja1g5104 440 MobiDBLite consensus disorder prediction 42 62 - -
Lja1g5104 440 MobiDBLite consensus disorder prediction 117 170 - -
Lja1g5104 440 MobiDBLite consensus disorder prediction 69 96 - -
Lja1g5104 440 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 52 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5104 Lja-Chr1 73592530 73595317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5104 172 438 C2H2 Transcription Factor Family AT1G75710 54.949 7.26e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5104 - - gmx:100814186 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5104 1 73592530 73595317 Lja1g5104 1 73592530 73595317 ECH