Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5097 ATGTCGACTCGATCGACTGGAGCCATAAGCCAGGACTGGGAACCAGTGGTGCTGCACAAATCGAAGCCCAAGGCGCAGAACCTGCGGAACCCCAAGGCCGTGAACCAGGCGCTGCGGAACGGCACAGAGGTACAGACAGTGAAGAAATCCGACGCCGGATCCAATAGGAAAACCGCTGGCCCGGTCGCGAATGCCAGGAAGCTTGACAAGGCGGCAGAGCTGGCGGCGCTGGAGCGCGTGGCGAAGATGATTCAGGCCAAGCTAGAGAAGCAGATCAATGAGCGGCCGCAGGTGGTGCAGGAGTATGAGAATGGTAGGGCGGTGCCGAATCAGAAGGTGCTCACGAAGATGGAGAAGGTGCTCGGGGAGGAAGATGAAGATGTTGAAAGGTGGCGGTTGTGGATGATGGAGGATTCAGGAAGTTAG 426 0.5798 MSTRSTGAISQDWEPVVLHKSKPKAQNLRNPKAVNQALRNGTEVQTVKKSDAGSNRKTAGPVANARKLDKAAELAALERVAKMIQAKLEKQINERPQVVQEYENGRAVPNQKVLTKMEKVLGEEDEDVERWRLWMMEDSGS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5097 141 CDD HTH_XRE 81 128 IPR001387 -
Lja1g5097 141 Gene3D - 60 125 IPR010982 GO:0003677
Lja1g5097 141 MobiDBLite consensus disorder prediction 41 64 - -
Lja1g5097 141 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Lja1g5097 141 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 124 - -
Lja1g5097 141 SMART mbf_short4 67 128 IPR001387 -
Lja1g5097 141 Coils Coil 74 94 - -
Lja1g5097 141 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 124 - -
Lja1g5097 141 ProSiteProfiles Cro/C1-type HTH domain profile. 85 128 IPR001387 -
Lja1g5097 141 Pfam Helix-turn-helix 82 123 IPR001387 -
Lja1g5097 141 MobiDBLite consensus disorder prediction 1 29 - -
Lja1g5097 141 SUPERFAMILY lambda repressor-like DNA-binding domains 79 124 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5097 Lja-Chr1 73243646 73244110 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja1g5097 MBF1 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5097 K03627 - twl:119996545 165.236