Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5092 ATGAAACTTATCATACAACTCTCTTATATTTTCCTCTTGTCTACTTCCATCTCTGCTCGAACCTTTTCGGATTACGTCAATCTAAATTTCACTGCTTCATATCTTGAATTCATTGGTGAAACCGGCACCTTCTTGTTTTCTCACAATAAAACATTCAAGGCTGCTATATTCAATCCTGGTGGTCAACAAACCAGTTTCTACCTTTGTGTCATCCATGTTGCTTCCAACACAATCATTTGGTCTGCAAACCGTGATGCTCCCATCTCAGGTTCTGGTCAAATGAATCTAACTGTCAAAGGGATTACAATTGCTGATGAAAATGGAAATCCTAAATGGTCAACGCCGCCGGTGAAGTCACTGGTATATAAGCTTGCACTCACTGAGTTGGGAAACCTTGTCTTGCTTGATCACTCCAATGGTTCCCTTTGGGAGAGTTTCCAGGATCCAACAGACACAGTTGTTATTGGACAGCGTTTGCCGGTTGGAGCTTCGTTGTCAAGCGCGGTATCCGATTCGGACTTGTCAAGAGGACATTACAATCTCACAATTTCTGCCTCTGATGCAATATTGCAATGGTATGGACAAACATACTGGAAACTTTCATTGGATAAAAATGCTTATAAGAATTCAAATGATGAGGTGGAGCACATGGCCATCAACAGAACAGGTTTTTATCTGTTTGGACATGATGAAACAGTGCCTGTATATCAAGTGGGGTTGCCCCTCACTGATTTTAGAATTGCCAAATTGGCTTCCTCTGGCCATTTTACAATTAGCAGCTTTTCAGGAGGTAACTGGAAACAGGAGTTTGTAGGGCCAAGTGGTGCTTGTGAAACTCCTTTAGCTTGTGGCAGGGCAGGTTTATGTACTCTTAGCACTGTATCCTCTGCACCTGTTTGCTCTTGTCCTCAAAATTTCCATGCAAACTCAGGTAATTCTGCTGGTTGTGTACCAAGCAATGGATCTAATTCTTTACCCTTTGCTTGTGGTTCTACTGATTATAATAGTCAATCAAATTCCTCAGTTGTTTCCTTTTCACAAATTGGGTATGGTCTAGAGTACTTTAGCAATATTTACTCTGATCCAGTTCTGGATGGAGTGAATTTAACTGTCTGTCAAAATCTTTGTTCAAGTAACTGTTCCTGCTTGGGAGTTTTCTATAAGAACTCATCTGGCTCTTGCTACATGATTGAAAATGCATTGGGATCCATTCAGTCAAGTGATAAAGGTGAACCAGACGTGTTGAGTTTCATTAAAATTAATGTGGTACCTACAAAAACTACTAATGATGATACTGATGATAAGCAAACTTCTAAAAATGGGGGGTTTCCTATGGCTGCTTCTGTGCTTTTACCTATTGCTGGGTTATTTCTCTTTGCGGCCGTAGTCTTCCTCGTTTGGAGAAGAGTGACATTGCCGAAGAAAGAAGAAGTGATATTAGGAAAATTCAACTCACATTCTTCAGAGGACATGGATGCCTTCTACATTCCAGGTTTACCTACAAGGTTTGAATATGAAGAACTTGAGGAGGCAACTGATAATTTCAAGACTCTAATTGGAGCAGGTGCTTTTGGTACTGTGTACAAGGGTGTGCTTCCTGATAAGACTGTTGTGGCAGTAAAGAAAATAATGAACATTGGTGTGCAAGGGAAAAAGGATTTCTGCACTGAGATTGCTATTATTGGAAATATTCACCATGTTAATTTGGTGAGACTGAGAGGCTTTTGTGCTCAAGGGAGACACCGAATGTTGGTCTATGAGTACATGAATCGTGGATCCTTGGATCGCAGCCTCTTTGGTGGTGGACCTGTTTTGGAGTGGCTGGAGAGGTTGGAAGTAGCTCTTGGAACAGCGCGCGGCCTCGCTTACCTCCACTGCGGATGTGAGCAGAAGATCATTCATTGTGACATCAAACCAGAAAACATTCTTCTGCAAGACCAATTTCAGGCTAAGATATCTGATTTTGGACTCTCAAAACTCCTTAGTCCTGAACAATCTGGCTTGTTCACAACAATGAGAGGCACGCGAGGTTATCTTGCTCCAGAGTGGCTTACCAATTCAGCAATTTCAGAAAAGACTGATGTCTATAGTTTTGGAATGGTGCTGCTTGAACTTGTCAGTGGAAGCAAAAATTGTTCTTACAAGTCAAGAAGCCATAGCATGGATGACAGTGGTGGCCATTCATCAAACTCATCCACAACAGGATTGGTTTATTTTCCACTACTTGCATTGGAGATGCATGAGCAAGGGAGTTACCTGGAGTTAGCAGATCCAAGGCTTGAAGGACGAGTTACATGTAATGAGGTGGAGAAACTTGTTCGCATTGCCTTGTGCTGTGTTCAGGAAGAGCCGGCACTGAGGCCAAGCATGACTTCTGTTGTTGGCATGTTGGAAGGTGGAACTCCATTGCCGCAGCCTAGGATAGAATCTTTGAATTTCCTTCGCTTTTATGGCCGTAGGTTTACTGAGGCTTCCATGATAGCTGAAGAGAATGACCGTAGCTCTATGATGCCTCAACAGGCACGTAATTCAACGGACGCAAGAAGAGGTTTACAAAATGGTTTTTCTTATATCTCTTCACAAAGTATCTCAGGGCCAAGGTAG 2604 0.422 MKLIIQLSYIFLLSTSISARTFSDYVNLNFTASYLEFIGETGTFLFSHNKTFKAAIFNPGGQQTSFYLCVIHVASNTIIWSANRDAPISGSGQMNLTVKGITIADENGNPKWSTPPVKSLVYKLALTELGNLVLLDHSNGSLWESFQDPTDTVVIGQRLPVGASLSSAVSDSDLSRGHYNLTISASDAILQWYGQTYWKLSLDKNAYKNSNDEVEHMAINRTGFYLFGHDETVPVYQVGLPLTDFRIAKLASSGHFTISSFSGGNWKQEFVGPSGACETPLACGRAGLCTLSTVSSAPVCSCPQNFHANSGNSAGCVPSNGSNSLPFACGSTDYNSQSNSSVVSFSQIGYGLEYFSNIYSDPVLDGVNLTVCQNLCSSNCSCLGVFYKNSSGSCYMIENALGSIQSSDKGEPDVLSFIKINVVPTKTTNDDTDDKQTSKNGGFPMAASVLLPIAGLFLFAAVVFLVWRRVTLPKKEEVILGKFNSHSSEDMDAFYIPGLPTRFEYEELEEATDNFKTLIGAGAFGTVYKGVLPDKTVVAVKKIMNIGVQGKKDFCTEIAIIGNIHHVNLVRLRGFCAQGRHRMLVYEYMNRGSLDRSLFGGGPVLEWLERLEVALGTARGLAYLHCGCEQKIIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGSKNCSYKSRSHSMDDSGGHSSNSSTTGLVYFPLLALEMHEQGSYLELADPRLEGRVTCNEVEKLVRIALCCVQEEPALRPSMTSVVGMLEGGTPLPQPRIESLNFLRFYGRRFTEASMIAEENDRSSMMPQQARNSTDARRGLQNGFSYISSQSISGPR* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5092 867 PIRSF SRK 1 848 IPR024171 GO:0004674
Lja1g5092 867 Gene3D Phosphorylase Kinase; domain 1 485 588 - -
Lja1g5092 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 199 IPR036426 -
Lja1g5092 867 ProSitePatterns Protein kinases ATP-binding region signature. 519 542 IPR017441 GO:0005524
Lja1g5092 867 MobiDBLite consensus disorder prediction 828 851 - -
Lja1g5092 867 SMART blect_4 36 149 IPR001480 -
Lja1g5092 867 Pfam D-mannose binding lectin 77 160 IPR001480 -
Lja1g5092 867 SUPERFAMILY Protein kinase-like (PK-like) 490 797 IPR011009 -
Lja1g5092 867 Pfam S-locus glycoprotein domain 246 309 IPR000858 GO:0048544
Lja1g5092 867 Gene3D - 39 148 IPR036426 -
Lja1g5092 867 Pfam Protein kinase domain 516 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5092 867 Gene3D Transferase(Phosphotransferase) domain 1 589 802 - -
Lja1g5092 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Lja1g5092 867 CDD STKc_IRAK 519 799 - -
Lja1g5092 867 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 3 867 - -
Lja1g5092 867 SMART serkin_6 513 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5092 867 ProSiteProfiles Protein kinase domain profile. 513 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5092 867 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 867 - -
Lja1g5092 867 ProSiteProfiles Bulb-type lectin domain profile. 29 147 IPR001480 -
Lja1g5092 867 CDD B_lectin 41 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5092 Lja-Chr1 73208179 73211324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5092 453 806 Receptor kinase-like Gene Family AT5G20050 40.642 1.22e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja1g5092 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5092 - - ahf:112766506 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5092 1 73208179 73211324 Lja1g5092 1 73208179 73211324 ECH