Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5090 ATGAATGATTTACCCGTATTTATTTTGATGAATTTGATTTGCACGGTGATGGAGGATTCAGGAATTGGAAGTTGGTGTTCTGATGAAGGTTATTCATCAAATGGTGTAGAGAAAAGCAATGGAGTAGCTGCTGGGATTGTTTCACCACCCACACCCACCCAGTTTGAGTTAGTTGGTGAGGATGAAACGGGTGAAGGAGTGGCTGTCAATAGTATGGATGACGTCGCACATACTTTGTGGGATTGTATGAATGCGACTGATTTTATGAAGTATCACTTCCTTAATCGGCAGGTAGCATTTGATTTCTACAACTTCTATGCTAGAGTTAAGGGCTTCTCAATAAGGAAAAGCAAGGTTTTGAGAAACAAAAAAGGTGATATTGTGCGGCAAGACTTAGTGTGTCACAAGGAAGGTTTTCGTGAAGAGAAAAACAGAATGAGGGCAAATCGTAAAAGGGAAACAAAGGTGGAGACAAGGTGTGGGCGCAGTGCAAAAATGAGGATTAGATTTGTTGGTGAAAGTGGTAGGTGGCATGTTGCTCTATTTGGAGAATCTCACAATCATGCGTTATTAGAGGGGAAGCAATCAGCAATGTTACCAGCACATCGCCAGTTAAAAGATAGTGATATAATGCGAATGAATAGCATGCGAAAAGTTGGTATAAGCACTACTGAGATATACAATTTTATTGCTGACCAATCTGGTGGGTTTGAGAAAACCAATTTTCTCAAGGTAGACATGTTGAATCAAATGACAAAGCAAAAACAAAAGGAGCAATGTGATGCCAAAGCCGTGCTGGTGTACCTTAAGGGCCTAGCTTCTAGTGATCCTGGGATCGGAAGTTCTGCTGTTAATGAGGAGACGCCAATTGAAGTGTTTGATAATGTGAAAAATCCTGAGGTAGTTAGGACCAAAGGTTGTGGGGGCACCTCAACTGGAAACGGAAACAAGAGCAAACGAAGGTGCACTGTATGTAAGAAGGAAGGCCACAACAAAACAACATGCAAACGACAAAAAACTTCTACAGGATTTTCTGATGTTGTTGGACTTGATGGTGCAGGCGTAGGTGAGTCCAACATGTAA 1083 0.4155 MNDLPVFILMNLICTVMEDSGIGSWCSDEGYSSNGVEKSNGVAAGIVSPPTPTQFELVGEDETGEGVAVNSMDDVAHTLWDCMNATDFMKYHFLNRQVAFDFYNFYARVKGFSIRKSKVLRNKKGDIVRQDLVCHKEGFREEKNRMRANRKRETKVETRCGRSAKMRIRFVGESGRWHVALFGESHNHALLEGKQSAMLPAHRQLKDSDIMRMNSMRKVGISTTEIYNFIADQSGGFEKTNFLKVDMLNQMTKQKQKEQCDAKAVLVYLKGLASSDPGIGSSAVNEETPIEVFDNVKNPEVVRTKGCGGTSTGNGNKSKRRCTVCKKEGHNKTTCKRQKTSTGFSDVVGLDGAGVGESNM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5090 360 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 83 214 - -
Lja1g5090 360 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 83 214 - -
Lja1g5090 360 Pfam FAR1 DNA-binding domain 101 191 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5090 Lja-Chr1 73095729 73098793 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g5090 FAR1 1.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5090 - - mtr:MTR_1g070355 205.297