Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5086 ATGGATATAGATTGCATCCATCACCTCGACTTCTCCGGACACAGCACCCTCACCAACACCCCATCTTCCGACAACGATAACTACGGATGCAGCTGGAACCACTGGTCCCCTGTCGTCAACTGGGACGCCTTCACCGGCAACCAGGACGACTTCCACCACCTCATCGACTCCATGATTGACGACAACAACACTGGCCCCGCGTTTTCAGACCACACCGCATCCACCACCTCGGAGGAGGAAGAAGAAGAAGAAGCAACCACAACAACAATGACCACAACCACGACAACAACAACCACCACGCCAGAAGCGGCAGACGACGACTTTAAGGGCCTGAGGCTGGTGCACCTGCTGATGGCCGGCGCGGAGGCCCTCACCGGCGCAAACAAGAACCGCGAACTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCACACCGACGGTACAAACATGGAGAGGCTTGCTGCGTATTTTACCGAAGCGCTGCAAGGCCTGCTAGAAGGCGCCGGGGGAGCGTACAATAGCAGCAGCAAGCACCACGTCATCGGAGGACCCCACCACGAACCCCAAAATGATGCTCTTGCTGCTTTCCAATTGCTTCAAGACATGTCCCCTTACGTCAAGTTCGGCCACTTCACGGCCAACCAGGCCATTGTCGAGGCCGTGGCCCACGAACGCCGGGTCCACATCGTCGACTACGACATCATGGAAGGGGTCCAATGGGCCTCACTAATGCAGGCCTTGGCCTCCAATCCCAACGGCCCTCACCTACGCATCACCGCGTTGTCTCGATCCGGCGTGGGTCGGAGGTCAATGGCCACCGTGCAGGAGACCGGAAGAAGGTTAACCGCCTTCGCGACCTCCCTGGGGCAACCCTTCTCATTCCACCACTGCAGACTTGAGTCCGACGAGACCTTTCGGCCCGCCGGGCTCAAGCTTGTGCGTGGAGAGGCCTTAGTGTTCAACTGCATGTTAAATTTGCCGCACCTTACTTATCGCTCGCCTAATTCAGTTGCTTCGTTTCTAACTGCGGCCAAGGCGTTAAGGCCGAGGCTGGTGACGGTGGTGGAGGAGGAGGTGGGGTCCGCTCTCGGCGGGTTCGTGGAGCGGTTCATGGACTCGCTACACCACTTCTCCGCCGTGTTTGATTCATTGGAGGCTGGGTTTCCCATGCAAGGTCGGGCCAGGGCTTTGGTAGAACGCGTCTTCCTTGGGCCGAGGATCGTGGGCTCGTTGGCCCGGATCTACAGAACCGGTGGAGGAGGGGAGGAGAGAGGGTCCTGGGGGGAGTGGTTGCGTGCGGCAGGGTTCAGCGGAGTTGCCGTGAGCTCCGCCAATCATTGCCAATCGAACTTGTTGCTGGGTCTTTTCAATGACGGGTACAGGGTGGAGGAGCTGGGTAGTAATAAGTTGGTGTTGCATTGGAAAACCAGGCGTTTGCTTTCTGCATCCCTTTGGACTTGTTCTTCAGAATCAGATTGTGCATAG 1494 0.5763 MDIDCIHHLDFSGHSTLTNTPSSDNDNYGCSWNHWSPVVNWDAFTGNQDDFHHLIDSMIDDNNTGPAFSDHTASTTSEEEEEEEATTTTMTTTTTTTTTTPEAADDDFKGLRLVHLLMAGAEALTGANKNRELARVILVRLKELVSHTDGTNMERLAAYFTEALQGLLEGAGGAYNSSSKHHVIGGPHHEPQNDALAAFQLLQDMSPYVKFGHFTANQAIVEAVAHERRVHIVDYDIMEGVQWASLMQALASNPNGPHLRITALSRSGVGRRSMATVQETGRRLTAFATSLGQPFSFHHCRLESDETFRPAGLKLVRGEALVFNCMLNLPHLTYRSPNSVASFLTAAKALRPRLVTVVEEEVGSALGGFVERFMDSLHHFSAVFDSLEAGFPMQGRARALVERVFLGPRIVGSLARIYRTGGGGEERGSWGEWLRAAGFSGVAVSSANHCQSNLLLGLFNDGYRVEELGSNKLVLHWKTRRLLSASLWTCSSESDCA* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5086 497 MobiDBLite consensus disorder prediction 87 103 - -
Lja1g5086 497 ProSiteProfiles GRAS family profile. 104 489 IPR005202 -
Lja1g5086 497 MobiDBLite consensus disorder prediction 62 104 - -
Lja1g5086 497 Pfam GRAS domain family 113 489 IPR005202 -
Lja1g5086 497 PANTHER SCARECROW-LIKE PROTEIN 26 15 490 IPR030028 -
Lja1g5086 497 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 490 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5086 Lja-Chr1 72987934 72989427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5086 74 492 GRAS Transcription Factor Family AT3G54220 36.806 3.89e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g5086 GRAS 7.1e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5086 - - gmx:100782300 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5086 1 72987934 72989427 Lja1g5086 1 72987934 72989427 ECH