Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5082 ATGTCATTGAGTCCTCCTAGAGAAAGAAGCATGAATGGCCAAACAAGGACTTACCAACTCTACTGGTGCTTCCGCTGCAACCGCACGGTCCGTCTCGCACGTGACAACCCAACCGGCATCACGTGCCCGCGCTGCTCCGACCAATTCCTCACCGAAATCACCGTCCCAAGGCCCCGCCTCGTCGTCGACTTCACCGCCCACGACCCATCCCCGGAAGCCCGCTTGCTCGAAGCCCTCTCCCTCATGCTCGACCCACCCATCCGCCGCTTCGACGGCACCGCCGCCGACTTCAGAACCCGACGCCCCTCCCGCCGTTTCCCACCGCCCGACGAAACAGAAACCCCCATCTGGCTCCCTCGCCACCGCCGCCGCAGTTCGGATCCAACCCGACCCGATGGTTATGGAGCCGGGTCCGGACCCAGATCGACCCAGCCTCGCACATGGGTCATTCTTCAACCCTTCGACGCTCCCGGCACGCTGGAGCCGGTTGTCCCGGGCGGCGTGGACACGAGAGACTACTTTGCCGGGCCGGGGCTCAACGAGCTGATCGAGCAGCTGACGGAGAATGACCGGCAGGGTCCGGCGCCGGTGCCGGTGCCGGAGAGAGTGATCGAGGCGGTTCCAAGGGTGAGGATCGAGAGCGGGCATTTGAAGGAGAATCCGCATTGTCCTGTTTGCCAGGAGGATTTCGAGGTGGGTGGTGAAGCGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCTTGGCTCAGGCTTCACAATTCTTGCCCCGTTTGCCGCAATGAGATACCCGTTTCGTGTTCTGAGGAGGAGGAGGAGGAGGGTGAGGAGGGTGACGGTGGAGGAGGGAGGTTACGACGGTGTTTGCGGTGGACGCGGCTTTCTTCTCTGTGGCCTTTTCATGGAAGAAGGTATCATCAGAGGGTTCATCCTGCTGCTGCTTCTTCATCGGGATACTTGTGGTTTAAAAAATAA 987 0.6018 MSLSPPRERSMNGQTRTYQLYWCFRCNRTVRLARDNPTGITCPRCSDQFLTEITVPRPRLVVDFTAHDPSPEARLLEALSLMLDPPIRRFDGTAADFRTRRPSRRFPPPDETETPIWLPRHRRRSSDPTRPDGYGAGSGPRSTQPRTWVILQPFDAPGTLEPVVPGGVDTRDYFAGPGLNELIEQLTENDRQGPAPVPVPERVIEAVPRVRIESGHLKENPHCPVCQEDFEVGGEARELPCKHVYHSDCIVPWLRLHNSCPVCRNEIPVSCSEEEEEEGEEGDGGGGRLRRCLRWTRLSSLWPFHGRRYHQRVHPAAASSSGYLWFKK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5082 328 MobiDBLite consensus disorder prediction 115 129 - -
Lja1g5082 328 PANTHER LD47007P 24 308 - -
Lja1g5082 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 24 308 - -
Lja1g5082 328 CDD RING-H2_RNF126_like 223 264 - -
Lja1g5082 328 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Lja1g5082 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 270 IPR013083 -
Lja1g5082 328 Pfam Ring finger domain 222 264 IPR001841 -
Lja1g5082 328 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Lja1g5082 328 MobiDBLite consensus disorder prediction 93 108 - -
Lja1g5082 328 SMART ring_2 223 263 IPR001841 -
Lja1g5082 328 MobiDBLite consensus disorder prediction 93 146 - -
Lja1g5082 328 SUPERFAMILY RING/U-box 203 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5082 Lja-Chr1 72876228 72878711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5082 195 304 C3H Transcription Factor Family AT1G68180 44.545 5.16e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5082 K11982 - gmx:100787399 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5082 1 72876228 72878711 Lja1g5082 1 72876228 72878711 ECH