Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5080 ATGGTTAAGTCAGAGCACAACAAGATCAAAACAGGACAAAAATCAAAGCCAGTTTCATCATCTTTATCCTCATCATCATCAGCATCATCAGAAAGCATGAAGAAGAAGTACAAAGGAGTCAGAATGAGAACATGGGGTTCATTTGTTTCAGAGATTAGAGCACCAAATCAGAAAACAAGGATATGGCTAGGATCTTACTCAACACCAGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGTCTCAAAGGGTCCTCAGCAAGTTTCAATTTCCCTTCAAGTTCTTCACTTTTCATTCCTCAAGACACTGCCATGTCCCCAAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGCTTCATTGACAACAATGCCAGCACCACCACTTCAACTCCTCCTCCTCCTTCAACCTCATCATCATTGGTCTCTTCCCCATCAATGGATGATGTCTCACTTGAATCATCTTTTGAATCAATGGCTATGATGGAACCTTGGTACAGCCTGGATGATCTGCAATCCACTAAGTATGTTGATCAGATGCTAAGTGCTTCTTCTTTCTATGATATTGATTCAACCCACCACCTGTTTAATGATGTGTATGAAGAGAGTGACATTCGTTTGTGGAACTTTTGCTGA 642 0.4143 MVKSEHNKIKTGQKSKPVSSSLSSSSSASSESMKKKYKGVRMRTWGSFVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSASFNFPSSSSLFIPQDTAMSPKSIQRVAAAAANSFIDNNASTTTSTPPPPSTSSSLVSSPSMDDVSLESSFESMAMMEPWYSLDDLQSTKYVDQMLSASSFYDIDSTHHLFNDVYEESDIRLWNFC* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5080 213 MobiDBLite consensus disorder prediction 1 38 - -
Lja1g5080 213 PIRSF PTI6 3 141 IPR017392 GO:0003700
Lja1g5080 213 PIRSF PTI6 115 212 IPR017392 GO:0003700
Lja1g5080 213 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Lja1g5080 213 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Lja1g5080 213 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lja1g5080 213 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Lja1g5080 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 213 - -
Lja1g5080 213 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lja1g5080 213 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lja1g5080 213 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Lja1g5080 213 MobiDBLite consensus disorder prediction 13 33 - -
Lja1g5080 213 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Lja1g5080 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 13 213 - -
Lja1g5080 213 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5080 Lja-Chr1 72847074 72848297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5080 37 212 AP2-EREBP Transcription Factor Family AT1G21910 50.526 6.67e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g5080 AP2 4.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5080 - - pvu:PHAVU_009G123300g 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5080 1 72847074 72848297 Lja1g5080 1 72847074 72848297 ECH