Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5079 ATGCTTGCGATTAAAAATCGGTTTAAGATTATCCTAACACCTGTTGACTCTTGTGCACCCAAGGAGCTTAATATGGGTTTGGCTATTATCCTAGTTGAAGATGGTATTGGTCGGGTGGAAGTGAAAGACTACACAATTGATGAGTATGATCCTGAGATCCAGAGAAGCCATCAACAAGTTACTAGGGGAGTAATGGTTCCAGCATCTAGTGAAGCCATTATGAGTTTGCTCAAGAAATCGAAGGTTACAAGGTCAGATGAATGTCGGGTCTGTTTGGAGGAGTTCCATGTTAGTGGTAGTGATGGTGATGATGCTAATTGCATAAGAGAAGACGGGTACTCAATGCCGTGTGGTCACATGTTTCACCAACATTGTATTATAACATGGTTGCTAACCAATCATGTGTGTCCTTTGTGCCGCAACCCTCTGCCAACCAATGACCACTAA 447 0.4273 MLAIKNRFKIILTPVDSCAPKELNMGLAIILVEDGIGRVEVKDYTIDEYDPEIQRSHQQVTRGVMVPASSEAIMSLLKKSKVTRSDECRVCLEEFHVSGSDGDDANCIREDGYSMPCGHMFHQHCIITWLLTNHVCPLCRNPLPTNDH* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5079 148 SUPERFAMILY RING/U-box 87 145 - -
Lja1g5079 148 Pfam Ring finger domain 86 140 IPR001841 -
Lja1g5079 148 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 145 - -
Lja1g5079 148 SMART ring_2 88 139 IPR001841 -
Lja1g5079 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 148 IPR013083 -
Lja1g5079 148 ProSiteProfiles Zinc finger RING-type profile. 88 140 IPR001841 -
Lja1g5079 148 PANTHER F6A14.12 PROTEIN-RELATED 49 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5079 47 148 C3H Transcription Factor Family AT1G18760 36.190 1.78e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5079 - K22378 ccaj:109801196 86.2705