Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5076 ATGAGTTCCAAAAATGTGTTTTGCAGATTAGGCGAGCAACTCAGTGATGCAAAACCATACTTGTTAATGATTGGGTTGCAATTTGGCATGGCTGGAAATTACATCTTCGGCAAGGATATTCTTAACCATGGGATGAGTCGTTTTGTGTTCATTGTTTATCGCAATGCCATGGCTACCGTTGCCATAGCTCCTTTTGCATTTTTTCTCGAAAGGAAAAGTAGGCCCAAGATGACACTATCAGTCTTCCTCCAGATAATGGTTCTGGGATTTCTAGAGCCAGTTTTTAATCAAAACTTCACTTACTTGGGGATGAAGTACACCTCCGCATCATTCGCATCTGCTATCACCAATGCCGTGCCCTCTATCACCTTTCTGCTCGCAGTCTTCGTCCGGCTGGAACGTCTCAAATTGAAGGAGATTCGGAGTCAAGCCAAAGTGATTGGAACATTAGTAACCTTTGGAGGAGCTTTATTAATGGCAGTGTACAAAGGTCCTGGGTTCAACCTTTTTCATTCTGAAAACACAACCCACGAACAAGATGGAAGCATCTCCTCTCACAGCCACCAAACTACTGGGGCTCTTTATATACTAATGGGTTGTGTGGCCTTGTCTTCCTTCTACATTTTGCAGTCAATAACGGTGAAAAGATATCCAGCAGAGCTATCACTGGCGACGTTGATTTGCTTGGCGGGAACAGCGGAAGGCACTGCGGTGGCACTTGTGGCTGAGCGTCACCCCCACGCTTGGGCAATTGGTTGGGACTATAGGATCTATGCTCCACTTTACACGGGACTAGTTAGTTCAGGAATCGCATACTATCTTCAAGGGCTGGTGATGAAAATAAGAGGCCCCGTATTTGCAACAGCCTTTAATCCTCTTTGCATGATCATTGTTGCTGGTTTGGGCTCCCTTATTTTAGGAGAACAGCTCCATCTTGGAAGTATCATTGGTGGCATCATCATCGCACTTGGTCTTTACTCAGTTGTGTGGGGAAAAGCAAAGGACTATTCAGACCCCAAATTATCATCACCAGCTACAGAGGAGACAAAGTCACAGCTGCCAAATACAGTAACTGATCATGATCCCAAAATTGATATTGCTGGGAATTTGAAAAACCAGCTAACCGCCAAGCTGAAGGGGAAAGAAACAGAGTTGTGTGGTACCACCATTGTTTAA 1176 0.4473 MSSKNVFCRLGEQLSDAKPYLLMIGLQFGMAGNYIFGKDILNHGMSRFVFIVYRNAMATVAIAPFAFFLERKSRPKMTLSVFLQIMVLGFLEPVFNQNFTYLGMKYTSASFASAITNAVPSITFLLAVFVRLERLKLKEIRSQAKVIGTLVTFGGALLMAVYKGPGFNLFHSENTTHEQDGSISSHSHQTTGALYILMGCVALSSFYILQSITVKRYPAELSLATLICLAGTAEGTAVALVAERHPHAWAIGWDYRIYAPLYTGLVSSGIAYYLQGLVMKIRGPVFATAFNPLCMIIVAGLGSLILGEQLHLGSIIGGIIIALGLYSVVWGKAKDYSDPKLSSPATEETKSQLPNTVTDHDPKIDIAGNLKNQLTAKLKGKETELCGTTIV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5076 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
Lja1g5076 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 333 - -
Lja1g5076 391 PANTHER WAT1-RELATED PROTEIN 12 364 IPR030184 GO:0016021|GO:0022857
Lja1g5076 391 MobiDBLite consensus disorder prediction 342 358 - -
Lja1g5076 391 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020|GO:0016021
Lja1g5076 391 Pfam EamA-like transporter family 18 160 IPR000620 GO:0016020|GO:0016021
Lja1g5076 391 PANTHER WAT1-RELATED PROTEIN 12 364 - -
Lja1g5076 391 MobiDBLite consensus disorder prediction 337 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5076 Lja-Chr1 72630891 72636068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5076 12 374 Nodulin-like Gene Family AT2G37460 48.901 5.78e-126 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5076 - - gmx:100782835 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5076 1 72630891 72636068 Lja1g5076 1 72630891 72636068 ECH