Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5074 ATGGGTGCGTGGCTGAGAAATGCAAAGCCATATTTGTTATTGCTGGCGGTCCAATTTGGTTCTGCTGGCATGTTCATTTTCGCCATGGATGCTATGAAGAAGGGTATGAGCCATTACGTCTTCATCGTCTACCGTAATGCCATCGCCGCCATAACGCTCTCTCCCTTCGCATTTGTTCTAGAAAGGAAAATAAGGCCCAAGATGAGTGTTAGGGTATTTGCAGAGATTATGGCACTAGCTTTTTTCGAAATAATACTTGATCAATGTTTCGCCCTCTTGGGGATGAAATTAACGTCCGCATCATTCCTGTCTGCCGTCATGAATGCCGCACCCTCCATTACTTTTGTCATGGCTGTTGTGCTGAAAATGGAGCACATGAAGATCAAGGAAGTAGCATGCCAAGCCAAAATGATAGGCACAGCAGTAACATTCGGAGGAACCTTGCTCATGGCACTTTACAAAGGTCCCATAGTTAGTGTTGTGAGATCATCAACTTTCCACGCTAGTCAGCCTCAGAATGTCAACGACGCCACCACCAACCACTGGATCATAGGCACGTGCTTCCTCCTCATTGGTTGTGCAGGCTTTTCTGCATTTTACATATTGCAGGCCATTACATTGAGAAAGTACCCAGCAGAGATGTCCCTGGCCACCTGGGTGTGCTTTGTAGGTGCAATCCAAAGCTCTGTAGTAGCCTTTTTCGCGGAACGACACCATACTCAAGCCTGGTCCCTCGGTTGGGATATTCGTCTCTTGGCGCCAGCTTATGCGGGCATAGTTACATCAGGAGTTCAATATTACATACAAGGCACTGTCATAAAAACCATGGGTCCAGTTATTGTGACTGCTTTTAATCCTCTGCGTATGATCATCGTCACGGCCTTGGCTTCCATCGTCCTCTCTGAGCAACTCTACCTTGGAAGTGTTATAGGAGCAATAGTGGTGGTTCTTGGCCTTTACTTTGTTGTGTGGGGAAAATCTAAAGAATACAAAACTCGCAACCCACCGTGCCCTGCAATGGAGAACTCAAAGCACGAGCAACAGAAGCTACCAGTCACAGCACCAAGAAAAGATAGTGACGATAATGAAACTCAATTTTGTGATGTAAAGAATGATGAGGAGTCCAGAGTGTCAAAAACAGGATGTCAGCGAAATTAA 1158 0.4594 MGAWLRNAKPYLLLLAVQFGSAGMFIFAMDAMKKGMSHYVFIVYRNAIAAITLSPFAFVLERKIRPKMSVRVFAEIMALAFFEIILDQCFALLGMKLTSASFLSAVMNAAPSITFVMAVVLKMEHMKIKEVACQAKMIGTAVTFGGTLLMALYKGPIVSVVRSSTFHASQPQNVNDATTNHWIIGTCFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGAIQSSVVAFFAERHHTQAWSLGWDIRLLAPAYAGIVTSGVQYYIQGTVIKTMGPVIVTAFNPLRMIIVTALASIVLSEQLYLGSVIGAIVVVLGLYFVVWGKSKEYKTRNPPCPAMENSKHEQQKLPVTAPRKDSDDNETQFCDVKNDEESRVSKTGCQRN* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5074 385 MobiDBLite consensus disorder prediction 334 385 - -
Lja1g5074 385 PANTHER WAT1-RELATED PROTEIN 7 354 - -
Lja1g5074 385 MobiDBLite consensus disorder prediction 350 385 - -
Lja1g5074 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Lja1g5074 385 PANTHER WAT1-RELATED PROTEIN 7 354 IPR030184 GO:0016021|GO:0022857
Lja1g5074 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 328 - -
Lja1g5074 385 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020|GO:0016021
Lja1g5074 385 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5074 Lja-Chr1 72568719 72572445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5074 5 378 Nodulin-like Gene Family AT2G37460 40.691 1.01e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5074 - - gmx:100811984 593.964