Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5065 ATGTCTTCGTCGTTCAGAACAATGTCTACTTCCTCAGACATAGCCATGTCTGTAAAAGCCCATGAGAAAAACAAAAAGAATGGTAATTTTTTGGTTATGTTTCCATTTTATAGTTTTATACCCCGGAAATATTTACACATTTTCCGGACCGGTTGTGAACATGAAGATGGGTATGAGGATGAAGATGAAGACTCGAGAGGAGTACTTTTTAGGAAAAGAAAGAAAAGGAAACTACATGGCGGGAACAAGGGCGCATTCCCTCCAAAATTTTCTCACACTAACTTCAAAAGAGGAAGCCCAAGGGAAAATCCACTCCTCGTAAAAAAGGTTCCAAGGTACGTGATCTTACCCGCCATTGATATTGTGACAAAATTCAAGTCTTGTTTGCTGCATTGGCATTGCAAATCGTTTGATTTTATGATTTTCCTCTGCGAACAGAATTCCACGCCGAAGAAAAATGCATCTGCTAACGAGAACAAGGTTTCAGCTTCACAGAATGTGTTTGCTGATCCAGTGCCTGATTTACGGTTAGAGGCAAAATTGTCAGCTGAGGAAAATTCAAGGATGTTTGCAGGACGGCAAGTGCATCCATTTTTTTCGTCGTGTAAAGCGGGGAAGAAAATCCAGGAGATACCTGAACCAGGAAGTAACCTGTGCAAAGCTAAGAGTGAGGATGAAAGGATTACCTGTGGTCCTATTCACGTATTTGAAAATATTAAGGATGATACTTCATCCCTTGATTGGAGAAACTGGACATTTTTGGGAAATACCACCTCCGAGAATTGTGGTCCAGAAAGTTCAAATTCATCTGTTTTGGAGGGTTCTGCTGAATCCTTAAATTTTAAAATGCTTCTTAGTACTTTGGATCCATCAGGCGCTTCAGTTTTTCAGAATGCTTTATCTTCCACAGATTTACTTTCTGTGCATCAAGAAAATCTGCAAGAAACATCACCGTCAAACGCATCTCCATTAGCAGAGAAAACAAAATGTCCTCAGATGCCAAAAGATGACAAAGTGGACTTGGAGGTGGACGAATGTGTGAATTTTGTGCAAGCTGGCATTTTTAGAAAGTCAGATTCCGAGCCACTGAGTAGATTTCTTCAAGAAAGTATGAGGTCGTACTACCGTACTTATGAAAACAAGGCTGAAGGCAGCTTGTGGACATACAAATACAGGCCAACGAAGGCTGTTGAGGTGTGTGGTAATGATGAATCTGTGAATTTCTTGCGTGATTGGCTACATCTTTGGCGTGAAAGACGTTATGCAGGCAGAAAGGCTACATCTAGTAAGGATAAAAATGACATGCAAGATGATGATGATGGTGATTATGACTGTTCTCATAGTGACTACGATTCAGAAGATATGAATGAGGAGGATTCCCTGCAAAATGTTCTTCTAATTACAGGACCTGTCGGGAGTGGCAAGTCTGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGTTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGGCTGTTGTCAAGCAGTATTTTGGAGACACTCTTAGTTCACATGGGTTTAAAAGATTATCAGAACACACTGCAAGTTCACAGAAGAAAGCTATGAAATTGCCCCCAGCTGCGCCATTGCTTAATGTTCAAGCTACTGATGAGGTGAATGAAGGAGTGGTTGAACTGATAGCTATATCTGATGATGAAGCTCAAAGCTCTGGTGGAACATCACGAAAGTTACTTGACAAAAATAATGTTGTTGCATCTGATAAATTTCAAACTTTAATTCTAGTTGAGGATGTGGACATACTTTTTCCTGAAGATCGTGGATGCATTGCTGCCATACAACAGATTGCTGAGTCGGCAAGGGGGCCAATTATATTGACCAGCAATAGTGATAATCATGGCCTGCCAGATAATTTTGATAGGCACCATGTTTCGTTCTCATTGCCATCGCCAAAGGATTTGCTTTGCCATTTGTACACTGTTTGTATCACAGAAGGAGTCAACATCCATCCTCTTTTACTGCAGAAGTTTATACAGTCTTGTGATGGAGATATCCGAAAAACCATCATGCACATTCAGTTCTGGCTGCAGAGTAAAAAGAAAGATGGAAAAGTACAACCGGATTATGGCTCACTTCCATTCGATCTTGAGGTTGGCCATCAGTTATTACCAAAGATAATGCCCTGGGATTTCCCCTCAGAGATATCTGAACTAATAGAGAATGAATTTGCCAAATCGGTAAACTTAATGGAAGAAAGCTCTAGTTTGCAAGAGTTAGATGAGCAGTATATGGAGACTGATTATATAAAGGCCAAGAAGGTGCAGATGATTGAGAGAAATGGATCTATATCAGACTACAGCGAGCTTGAAATTAAATATAATGCTATTTCTGAGTTTTCCAATTGCTCTGGATCCCCACTAGCATCCCCTCGGCAAAATGGTCGGAGGAAACTTGTAGTAATGTCCTCTGATTCTGAGGATGAAGATTCAAGTCATCGATGTTCGCTAGACACTTGTGATGATGCTAATAAGAGACAATCCATCAAAGAAAATAATGAACCCCCCTCTGAGTTTCAATTGAATGAAAACTATCCCAGCACATCAGTGCGCAAATTGGTTTGTTCTGAATTGGAGGATCCAGAGGAAGAACATATTAAAGATTCAGAAGCAGCTGATGACACATGCTTAAATGAAACTTGTAAATCATTTGATGTGTCCTGTGTGCCAGAATCAACGTTTGTTCCTGAGACTGCCATTGAAAATGGAACAGGGACAGTGTCCGGAGAAGTGTCTTCTGGTTGCCCTGCTGGTCCTCTGGAAGTATCGGTGAATAATGAGTTAAAACCATTCACTTTCAGTGTTCGCAGACGCTTAACAAAATTGTCACAAAATTCAGGTCTCTTGGTGGATGCTGAAGTTCCAGATTCTTCGCCAAATGAGGGTTTGCAAGATTTTCTACATGAAAATATGGAAACTACAACTGTGAAGGTGATGGATGAGTGTAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCAAGTCCTTTGACGGAGACAGATATGGTTCAAGAAATGTGGAGAAAACTCCGTGAGCGTGGAGTGGAATTAAAACAGCATGTTACCTCAGATAAGCCAGGTGCTTTTCAAGTTGTTAACCTTGCTTGTGGACTGAGCAATCTAATTTCCGAAGCTGACTTGTTTCACACTCACCAGCGAAAATTGGATATTGTGGAATCTCCAATATTCCTTTCTGATGAAGCTGCATCTAGTTGTTATCATGAACAAACAATGACGTCCACTGTTGCTGTACATGGGTTTTGTTCTTATGCTAAACGAATAGCAGATGCAGGATCAAAGTTAAATTGTGCAAATTGGACTGATTTAGCTAATGAGATGTTGGCCTCCACAACTAATATTATGACTCTGGGGAAATTATCCAGACAGGATCTTACCAAAAGCATGGTTATTTATGCTGGAAAGGAACTTGAGTTGAATAATCCAGTATATAATATGCAGAAAAGCAAAAACAATGCATCTCTGCTTGATGCCATTCAATCCATTGTTCCTGCAAGAATATCCCTGGCACTGAAAGGTGAAGCATTCAGTGAATATCTATCTTCAGTGCGCCAAATTTCTAGGTCAGAGGCCTTCCGGATTTCACAAGGTGTTGAAAAGAGAAGAGGAAGGGTGCGGGGTGCTCAACATTACTTGAACAGGTGTGCAATGTTGTCTCCTGAAGATATATCTTTGGTGAACGAGGGTTATTTGTACAGAAAGTTTTCACAGGATACAACAAACACAGAAAGCTAA 3804 0.4051 MSSSFRTMSTSSDIAMSVKAHEKNKKNGNFLVMFPFYSFIPRKYLHIFRTGCEHEDGYEDEDEDSRGVLFRKRKKRKLHGGNKGAFPPKFSHTNFKRGSPRENPLLVKKVPRYVILPAIDIVTKFKSCLLHWHCKSFDFMIFLCEQNSTPKKNASANENKVSASQNVFADPVPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKIQEIPEPGSNLCKAKSEDERITCGPIHVFENIKDDTSSLDWRNWTFLGNTTSENCGPESSNSSVLEGSAESLNFKMLLSTLDPSGASVFQNALSSTDLLSVHQENLQETSPSNASPLAEKTKCPQMPKDDKVDLEVDECVNFVQAGIFRKSDSEPLSRFLQESMRSYYRTYENKAEGSLWTYKYRPTKAVEVCGNDESVNFLRDWLHLWRERRYAGRKATSSKDKNDMQDDDDGDYDCSHSDYDSEDMNEEDSLQNVLLITGPVGSGKSAAVYACAQEQGFDILELNASDCRNGAVVKQYFGDTLSSHGFKRLSEHTASSQKKAMKLPPAAPLLNVQATDEVNEGVVELIAISDDEAQSSGGTSRKLLDKNNVVASDKFQTLILVEDVDILFPEDRGCIAAIQQIAESARGPIILTSNSDNHGLPDNFDRHHVSFSLPSPKDLLCHLYTVCITEGVNIHPLLLQKFIQSCDGDIRKTIMHIQFWLQSKKKDGKVQPDYGSLPFDLEVGHQLLPKIMPWDFPSEISELIENEFAKSVNLMEESSSLQELDEQYMETDYIKAKKVQMIERNGSISDYSELEIKYNAISEFSNCSGSPLASPRQNGRRKLVVMSSDSEDEDSSHRCSLDTCDDANKRQSIKENNEPPSEFQLNENYPSTSVRKLVCSELEDPEEEHIKDSEAADDTCLNETCKSFDVSCVPESTFVPETAIENGTGTVSGEVSSGCPAGPLEVSVNNELKPFTFSVRRRLTKLSQNSGLLVDAEVPDSSPNEGLQDFLHENMETTTVKVMDECSRVDFKLKSTFVESSPLTETDMVQEMWRKLRERGVELKQHVTSDKPGAFQVVNLACGLSNLISEADLFHTHQRKLDIVESPIFLSDEAASSCYHEQTMTSTVAVHGFCSYAKRIADAGSKLNCANWTDLANEMLASTTNIMTLGKLSRQDLTKSMVIYAGKELELNNPVYNMQKSKNNASLLDAIQSIVPARISLALKGEAFSEYLSSVRQISRSEAFRISQGVEKRRGRVRGAQHYLNRCAMLSPEDISLVNEGYLYRKFSQDTTNTES* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5065 1267 MobiDBLite consensus disorder prediction 314 333 - -
Lja1g5065 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 698 IPR027417 -
Lja1g5065 1267 MobiDBLite consensus disorder prediction 426 454 - -
Lja1g5065 1267 CDD AAA 465 523 - -
Lja1g5065 1267 Gene3D - 384 643 IPR027417 -
Lja1g5065 1267 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 152 1263 - -
Lja1g5065 1267 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 152 1263 IPR004582 GO:0006281
Lja1g5065 1267 MobiDBLite consensus disorder prediction 800 834 - -
Lja1g5065 1267 MobiDBLite consensus disorder prediction 816 834 - -
Lja1g5065 1267 MobiDBLite consensus disorder prediction 437 454 - -
Lja1g5065 1267 Gene3D - 645 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5065 Lja-Chr1 72387516 72398766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5065 387 690 Core DNA Replication Machinery Family AT5G22010 22.684 4.57e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5065 - - gmx:100784209 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5065 1 72387516 72398766 Lja1g5065 1 72387516 72398766 ECH