Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5050 ATGGAACCTGAGGAGGGAAAACAATCTTCCCACAAGAACCCCTACGTTGAGCTAGAACAAGTTAACTTTGATTACATTCTAGCAATTGGGCTTCAAGAACGAGAGAGAGAGTTCACAATGCTAGCGACGATTCAAAGTGAAAGTGATGAAGATGCAAGTGAGTCCTCTTTCGATGATGATGCTGATTTTTCTGAGAGACAAGAGTTCGAAACTGACCCGCAGTTTCTTGAATGTGAAGGAAACAATGATGATGAGGGAATGGAAATTGAAGAAGATGAAATTGATCCAGATGAATTGTCTTATGAGGAGTTAATTGAATTGGGAGAAATTATAGGAGAAGAGAAGAGAGGGTTATCAGAAAATGAAATCTCTTCCTGCTTACACCCTTACACTTTCCAATCTGCTGAAAGCAAAAGTGGAATTGAAAGGTGTGTGATTTGTCAGGTTGAATACGAAGAAGGTGAAGAAGCTCTTGTGGCACTTGATCAATGTGAGCACCCTTATCATGGGGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATCTGTAGCAATGAAGTCTCAACTTCCAATATGCCTAGCAATCCTTGA 600 0.4017 MEPEEGKQSSHKNPYVELEQVNFDYILAIGLQEREREFTMLATIQSESDEDASESSFDDDADFSERQEFETDPQFLECEGNNDDEGMEIEEDEIDPDELSYEELIELGEIIGEEKRGLSENEISSCLHPYTFQSAESKSGIERCVICQVEYEEGEEALVALDQCEHPYHGDCISKWLQIKKVCPICSNEVSTSNMPSNP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5050 199 ProSiteProfiles Zinc finger RING-type profile. 144 187 IPR001841 -
Lja1g5050 199 SUPERFAMILY RING/U-box 143 192 - -
Lja1g5050 199 MobiDBLite consensus disorder prediction 59 73 - -
Lja1g5050 199 MobiDBLite consensus disorder prediction 44 73 - -
Lja1g5050 199 Pfam RING-H2 zinc finger domain 142 186 IPR024766 GO:0008270
Lja1g5050 199 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 195 - -
Lja1g5050 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 195 IPR045191 GO:0061630
Lja1g5050 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 196 IPR013083 -
Lja1g5050 199 SMART ring_2 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5050 Lja-Chr1 71243258 71243857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5050 91 190 C3H Transcription Factor Family AT3G63530 51.961 2.71e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5050 K19045 - gmx:100526881 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5050 1 71243258 71243857 Lja1g5832 1 104805040 104805700 PCT