Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5049 ATGGCATCAGAGCTTCAATTGCCACCGGGTTTCCGATTCCATCCAACGGATGAGGAGCTCGTGCTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCGATCGCTGTTCCAATCATCGCTGAAATCGATCTCTACAAATACGATCCTTGGGACCTTCCTGGTTTGGCTTCGTACGGAGAGAAAGAGTGGTACTTCTTTTCACCTCGGGACCGGAAATATCCAAACGGTTCAAGGCCAAACCGGGCGGCTGGAACCGGGTACTGGAAGGCAACCGGGGCAGATAAGCCCATTGGTCACCCCAAACCGGTTGGGATCAAGAAAGCCTTGGTGTTTTATGCTGGGAAAGCACCCAAAGGTGACAAAACCAATTGGATCATGCATGAGTATCGTCTTGCCGACGTAGATCGCTCCATTCGCAAAAAGAACAGTCTAAGGCTGGATGACTGGGTGCTGTGCCGCATTTACAACAAGAAGGGCTCGATCGAGAGACAACCAAGCGGCGCCGTTTACAGCGTCAAGACGGAGTCATCGGAACTGGAAAAGCGGAAGCCGGAGATTCTGACCCGCGCTGCCGGGTGCCTTCCACCGCCGCATCCGCCGCAAGCGCCGGCGGCGGGCGTGACGGATTACATGTATTTTGACGCGTCGGATTCGGTCCCGAAGCTGCATACTGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCGCGACGGAGGTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAAAAGAGCCTCGAGTTTCCTTATAATTACGTGGATGCCACTCTCAGCAATAACAACAGCAACAACAACGGATTTGGGTCCCAGTTTCAGAGTGGTAATCAGCTGTCGCCGCTGCAGGATATGTTCCTGTACATGCCCAAGCCGTTCTAA 900 0.5478 MASELQLPPGFRFHPTDEELVLHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGSIERQPSGAVYSVKTESSELEKRKPEILTRAAGCLPPPHPPQAPAAGVTDYMYFDASDSVPKLHTDSSCSEQVVSPEFATEVQSEPKWNEWEKSLEFPYNYVDATLSNNNSNNNGFGSQFQSGNQLSPLQDMFLYMPKPF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5049 299 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Lja1g5049 299 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lja1g5049 299 PANTHER NAC TRANSCRIPTION FACTOR 56 2 270 - -
Lja1g5049 299 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Lja1g5049 299 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 270 - -
Lja1g5049 299 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5049 Lja-Chr1 71222264 71224284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5049 1 299 NAC Transcription Factor Family AT1G01720 70.000 1.66e-149 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g5049 NAM 7.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5049 - - gmx:100805768 511.916