Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5048 ATGGCGGAGGCGGAGGCGATTCATCCCATGGAAATCGACGGCGACGACGACCTTACTTACTCCGCGAGGCCCGACAAGGGCAAAAGTGTCCTCGTCGCCGGCAACCCTCCCGGCGGCCAAAAGGCGATCCCGTGGGTTGAGAAGTACCGTCCTCAGTCCCTCGACGACGTCGCTGCTCACCGCGACATTGTCGATACTATTGATAGGCTGACTACTGAGAACAGATTGCCCCATCTTCTACTGTATGGCCCTCCTGGTACGGGAAAAACATCAACTATCCTCGCTGTGGCGCGCAAACTGTATGGCGCGCAATACCGCAATATGATTTTGGAGCTGAATGCTTCTGATGATAGAGGAATTGGTGTTGTACGGGAGCAGATTCAAAATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGACCTCTGTAAAACTGGTCTTGTTAGATGAAGCGGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATATGTAATCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGCCCATGTCAGTGAAAGATTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGACAGTGGCTTAGAAGCCCTTGTACGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCATTGCCTAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATATATGAAATCAAGACGAGGAAAGGATTGGCCGTGATAGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCATCTGTTCGAGTGCAGCTGATGACTGATTTAGCAGACATAGAGTATAGATTAAGTTTTGGGTGCAACGATAAACTTCAGCTTGGATCAGTTATTTCTTCTTTTACACGTGCTAGATTTGCACTCGTTGAAGCTGCTAACCTTCTGAATCCGGTCCATTAG 1119 0.4477 MAEAEAIHPMEIDGDDDLTYSARPDKGKSVLVAGNPPGGQKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYRNMILELNASDDRGIGVVREQIQNFASTQSLSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLAVIDIVREVTMFVFKIKMPPSVRVQLMTDLADIEYRLSFGCNDKLQLGSVISSFTRARFALVEAANLLNPVH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5048 372 Gene3D - 267 364 - -
Lja1g5048 372 PANTHER REPLICATION FACTOR C SUBUNIT 5 40 361 - -
Lja1g5048 372 SUPERFAMILY post-AAA+ oligomerization domain-like 267 356 IPR008921 GO:0003677|GO:0006260
Lja1g5048 372 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 40 361 - -
Lja1g5048 372 Gene3D - 204 266 - -
Lja1g5048 372 Pfam Replication factor C C-terminal domain 267 352 IPR013748 -
Lja1g5048 372 Pfam ATPase family associated with various cellular activities (AAA) 79 199 IPR003959 GO:0005524|GO:0016887
Lja1g5048 372 CDD AAA 63 201 - -
Lja1g5048 372 CDD HLD_clamp_RFC 202 264 - -
Lja1g5048 372 Gene3D - 38 201 IPR027417 -
Lja1g5048 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 260 IPR027417 -
Lja1g5048 372 SMART AAA_5 75 205 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5048 Lja-Chr1 71211078 71216755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5048 5 365 Core DNA Replication Machinery Family AT1G77470 76.757 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5048 K10756 - gmx:100782652 636.721