Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5044 ATGGCGGTGGCGAGGCCCATGGCACCTGTCTGGAATCTCCAGTGTGTCCAATTGAATGAGCTTGACGTAGAGTGTTGTCGCTATCTCCAGCAACATCTCATTGGGAATTATTTCCAAATGAAAGTTCGAGTAAGACGGGAACCATGCTTTTTGCTTCATCCAAATATGCCTTCTACTTTAACAGCCGTGAACCCTCCTTCAATTGAGTGTGACATTAGGAGCTTCATCATCGAATCTTGGGATGATATACGAGAAAATGGTCTATCAAGATTTGAAAGCAACTTATCTTATAATCATATCATTCCTGCAGAGTTCATTCCATCACTGGCACAGAATGTGATACAATATGCCAATGAATTGGTCCAAGGTTGTCCTCCAGGTTTCGGTTACGGTTATGAGAGTCCGCACTTGACTTGGTTTAAGTTTGTTCTGGATATTACTGTTCCTGAGTTAATTGAAGATCAAGATCTCATCATCAGGAACATAATGTGGCAGTCCGTCACCCAAATGGCTTCTGAGTTAGGTGACAATCAAGATGACATCAGGGTTCCTGAGTTGTATCACAATGAAGATCACTTCATGGATTCTGAGTTATATGACATGCTTTCTGAGTTATCTAACAGTGTAGATTACACCCTCACGTGGGAGCCCCTTGAAATGGCTCCTACTTCAATTGCCATTGAATCCCTAAAGAAAGTTAAGTTGGAAGAAGGTGCTGCCATGGAAAGTTGTAGTATTTGTCTAACAGAGCTTGGTGATGGTGCTAGGGCAGTTTCATCAACACCTTGCAAGCATGTGTTTCACCAAGATTGTCTTGTTCAGTGGCTAATCAAAAGCCCTACTTGCCCTTTGTGTCGCTGCGCCATCCCCACCTTGATTGATTACACTTGA 891 0.4287 MAVARPMAPVWNLQCVQLNELDVECCRYLQQHLIGNYFQMKVRVRREPCFLLHPNMPSTLTAVNPPSIECDIRSFIIESWDDIRENGLSRFESNLSYNHIIPAEFIPSLAQNVIQYANELVQGCPPGFGYGYESPHLTWFKFVLDITVPELIEDQDLIIRNIMWQSVTQMASELGDNQDDIRVPELYHNEDHFMDSELYDMLSELSNSVDYTLTWEPLEMAPTSIAIESLKKVKLEEGAAMESCSICLTELGDGARAVSSTPCKHVFHQDCLVQWLIKSPTCPLCRCAIPTLIDYT* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5044 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 292 IPR013083 -
Lja1g5044 296 ProSiteProfiles Zinc finger RING-type profile. 244 286 IPR001841 -
Lja1g5044 296 SMART ring_2 244 285 IPR001841 -
Lja1g5044 296 SMART ringv_2 243 286 IPR011016 GO:0008270
Lja1g5044 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 169 288 - -
Lja1g5044 296 SUPERFAMILY RING/U-box 227 292 - -
Lja1g5044 296 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 169 288 - -
Lja1g5044 296 Pfam Ring finger domain 243 286 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5044 Lja-Chr1 71118220 71119110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5044 225 286 C3H Transcription Factor Family AT4G12190 46.875 2.58e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5044 - - lja:Lj1g3v0828080.1 142.51