Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5042 ATGGGGGAAGAGTCAAAGAAGGTTTCGTTTGACGGTGAAGCAGCGTCGTTACTGGTGAAGGAGCTGAGGGGAAGCTTCAATTACGGCACAGCGCGAAGCTACGAATGGAGAGTGTCGCAGGTGAAGGCGCTTTTGAAGATGCTGGATGAGAACGAGGAGCAGATCATTGATGCTCTTCGTTCCGACCTCGCCAAACCCCCACTCGAAACCGTTGTCTATGAGATTGGTATGGTTAAAAACTCATGTGAAATCATTCTGAAGGAACTGAAACAATGGATGATGCCAGAAAAGGTTAAAACATCACTCGCAACTTTTCCCTCTTCAGCTGAATTAGTGCCTGAACCTCTGGGTGTTGTGTTAGTCATCTCTGCATGGAACTACCCATTTTTGTTGTCTCTTGATCCAGTGGTAGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAAATTTCTCCGGCGTCATCTTCACTGCTTGCAGAATTGTTAGGGAAGTATATGGATAACTCATGTATCAGAGTTGTTGAGGGGGGAGTTGATGAAACCACAGCACTTTTGCGGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGAAACGTGGGACGCATAGTGATGACTGCTGCTGCAAAACACCTTACACCGGTTGTGCTGGAACTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATGTCAACTTACCGGTATCAGCTAGACGGATAATTGCAGGCAAGTGGGGGTGTAACAATGGACAAGCCTGCATTTCTCCGGATTATGTTATAACAACAAAAGACTTTGCTCCCAAGTTGGTGGATGCACTAAAGACTGAATTGGAGAACTTTTTTGGAAAGAACCCAATGGAATCACAAGATTTGTCCCGCATTGTGAATTCCCATCACTTTGCTCGCTTGATCAAGTTCTTGGATGATGATAAGGTTTCTAGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAGCAAATTAAGGATTGCTCCCACTATTTTACTGGATGTTCCACGAGATTCTCTGATAATGAGCGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTGAATAAAGTAGAAGAAAGCTTCAATGTGATCAACTCAGGAACAAAGCCCCTCGCTGCATATTTATTTACAACCAACGAGAAGTTCAAGCAGGAGTTTGTAATGAACGTTTCAGCCGGGGGTTTGCTTATCAATGACACAGTCTTACATCTTGCGGTTCCCAAATTGCCATTTGGGGGAGTAGGGGATAGCGGAATGGGTGGATACCACGGGAAATTCTCCTTTGATGCTTTTACCCACAAAAAGGCAGTTCTTTATCGCGGTTTTACCGGCGACGCGTCGGTTAGGTACCCACCATACACTAAAACAAAACAGAGTTTGATGAAGGCTCTTATTGGTGGTGACATTCTTGGCATGGGTCGTGCTCTTTTTGGATGGTCCTAG 1464 0.446 MGEESKKVSFDGEAASLLVKELRGSFNYGTARSYEWRVSQVKALLKMLDENEEQIIDALRSDLAKPPLETVVYEIGMVKNSCEIILKELKQWMMPEKVKTSLATFPSSAELVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPASSSLLAELLGKYMDNSCIRVVEGGVDETTALLRQKWDKIFYTGNGNVGRIVMTAAAKHLTPVVLELGGKSPVVVDSNVNLPVSARRIIAGKWGCNNGQACISPDYVITTKDFAPKLVDALKTELENFFGKNPMESQDLSRIVNSHHFARLIKFLDDDKVSSKIVYGGEKDESKLRIAPTILLDVPRDSLIMSEEIFGPLLPIITVNKVEESFNVINSGTKPLAAYLFTTNEKFKQEFVMNVSAGGLLINDTVLHLAVPKLPFGGVGDSGMGGYHGKFSFDAFTHKKAVLYRGFTGDASVRYPPYTKTKQSLMKALIGGDILGMGRALFGWS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5042 487 Pfam Aldehyde dehydrogenase family 35 444 IPR015590 GO:0016491
Lja1g5042 487 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 220 227 IPR029510 GO:0016491
Lja1g5042 487 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 442 IPR016162 GO:0016491
Lja1g5042 487 PIRSF ALDH 3 479 IPR012394 GO:0006081
Lja1g5042 487 PANTHER ALDEHYDE DEHYDROGENASE 4 487 IPR012394 GO:0006081
Lja1g5042 487 SUPERFAMILY ALDH-like 19 454 IPR016161 GO:0016491
Lja1g5042 487 PANTHER ALDEHYDE DEHYDROGENASE 4 487 - -
Lja1g5042 487 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 224 424 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5042 Lja-Chr1 71049468 71054295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5042 10 487 Aldehyde Dehydrogenase Gene Family AT4G34240 65.481 0.0 645