Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5037 ATGGAGTTTGTGGGTACGAGAAAACTACAACAAAATCCGCAACTGCAACTCCAACAACAGCATTTTCATGTATTGGCAGTGGACGACAGTGTCATTGATAGGAAGCTTTTGGAGAGGCTCCTTAGAGGCTCTTCATGCAAAGTTACCTGTGTGGACTCTGGAGATAAGGCTTTGAAATATCTTGGTCTGATTGATGACCTTGATAATACTTCTTCAGCTTCTTTAGAATCACCAATTTCTCCTCAACAAGTTGAACAAGAGGGAATCAAAGTGAATTTGATCATGACAGATTTCTGCATGCCAGGGATGAGTGGCTATGATTTGCTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCTGTCGTGGTAATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTGGAAGAAGGGGCAGAGAAGTTTCTATTGAAGCCTTTGCAATTGTCAGATTTGGAGAAGCTTCAGCCATACTTTCCCAAATCCCTTGATGAGTCTTGTGATGATGATATATCTGCTAACAGTTCCATAGGTTCTGACATTGACAAGCTCATCAACAACAACAATAACAGTAACAATAATAGTTTAATTACTAAAAGAAAGGCCATGTCTCCTACCCCTCCTGAGAGATCAAGACCCAAAATGAAAGGGTTGGCGGTGGTGTAA 675 0.4104 MEFVGTRKLQQNPQLQLQQQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLIDDLDNTSSASLESPISPQQVEQEGIKVNLIMTDFCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRISMCLEEGAEKFLLKPLQLSDLEKLQPYFPKSLDESCDDDISANSSIGSDIDKLINNNNNSNNNSLITKRKAMSPTPPERSRPKMKGLAVV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5037 224 SUPERFAMILY CheY-like 22 156 IPR011006 -
Lja1g5037 224 MobiDBLite consensus disorder prediction 187 224 - -
Lja1g5037 224 Gene3D - 23 166 - -
Lja1g5037 224 ProSiteProfiles Response regulatory domain profile. 23 163 IPR001789 GO:0000160
Lja1g5037 224 MobiDBLite consensus disorder prediction 187 204 - -
Lja1g5037 224 SMART REC_2 22 159 IPR001789 GO:0000160
Lja1g5037 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 223 IPR045279 GO:0009736
Lja1g5037 224 Pfam Response regulator receiver domain 24 157 IPR001789 GO:0000160
Lja1g5037 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 10 223 - -
Lja1g5037 224 CDD REC_typeA_ARR 24 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5037 Lja-Chr1 70938487 70941684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5037 19 165 Response Regulator Gene Family AT3G57040 61.745 1.58e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g5037 Response_reg 1.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5037 K14492 - gmx:100801334 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5037 1 70938487 70941684 Lja1g5037 1 70938487 70941684 ECH