Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5031 ATGGCGGTGAAGGTCACAGAAATTGGATCAAATGATAGTTTTATTAAAGCAAAGACGACCATAGTGAACTTCTGGGAGTCTCAGGATATTTTAGCAAGTTTAACACCATTGGCTGAAAAAGAAGATCTGTGTATCATGGGAGCGACTGGAATCGTATCGCATGTTGAATTTCTCAATCGACAAGGAGCTCCAATAGTTGTTCATAGAGATTTTCAAATTGTCTCACTTGAAGGCAACATTGTATACCCAAAAGAAAATAGTAAGAACTTGTCAAGCTGGGCAAATGTTATGTTGGCTGGAGAAAATGGTCTTCGAGGAGGACCAGTGAAAAGCTTAATTGCTAAATCACCTGTTCAGGTTATTCTTAGCACAGTTGGTAAATCAAATATACAAAGTAAAGCAACAGAAGATATGATAAAAGATGAAAATTTTGCCGTATTCGTGAACCATATGAATGGTGCGAATGAAATGATGAAGAAGGTCTATGAAGTGACCTTGAAGGAGCTCAATCAGTCGTGA 519 0.3796 MAVKVTEIGSNDSFIKAKTTIVNFWESQDILASLTPLAEKEDLCIMGATGIVSHVEFLNRQGAPIVVHRDFQIVSLEGNIVYPKENSKNLSSWANVMLAGENGLRGGPVKSLIAKSPVQVILSTVGKSNIQSKATEDMIKDENFAVFVNHMNGANEMMKKVYEVTLKELNQS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5031 172 CDD DUF296 28 124 IPR005175 -
Lja1g5031 172 SUPERFAMILY AF0104/ALDC/Ptd012-like 18 127 - -
Lja1g5031 172 Pfam Plants and Prokaryotes Conserved (PCC) domain 20 124 IPR005175 -
Lja1g5031 172 Gene3D - 18 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5031 Lja-Chr1 70782369 70785568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5031 21 124 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 32.143 1.65e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5031 - K00333 lja:Lj2g3v1588540.1 167.548