Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5028 ATGGTTGATGATAGGGTGGATACAATTGGCCGATTAGCACAGTGGAAAGTCGACAACCTAGGACCTTCTTCCTGCAAAAAATCTGAACCGTTCAAGGTCGGACTCTGGAACTGGTGCTTTTTGATAATAAGGAATCATCACCTCTTCATACATCTCTATCCAGAACCTTCTAGGGCTTCTAAGGAAAACCCACCTCATGCTCGAATTGTTCTTCGAATTTCCAATGCTGGGGTTGGTTCATCCCGCAAGTTTCACATTTCTCCTGTTCAGGAAAAGCTGATTAAGACTGAAGATGACTTTGTTTGGACGGTTGATACTGCTCCCGTTGGCCGCTTCATTATTGATGTTGAGTTTCTAGACCTGAAGATATGCACTATGAAAGGTGAAGAAGCTAGTTCTATATGGCCATCTGATGGAAATTTGCTATCCGTTGCAGCTCAAAGTAGTTCTCTTCATTGCCTCGCTCACATGTTTGATGAGGCCATACACGCTGACCTAACCATTATCACGGCTGACGGTACATTTAGAGCTCACAAGGCAGTTCGGTCGGCAAGTTCTCCTGTGTTCCAAAGCATGTTTCATCACGACCTGAAGGAAAAAGAGTCATCTACAATCCATATAGAAGACATGTCACTCGAATCCTGCAAGGCTCTAATCAGCTACTTTTACGGAACAATTAAACAAGAAGATTTTTGGAAACACCGGCTTCCATTGCTCGCAGCAGCTAATAAATATGACATTGGAGGTTTGAAAGGTTGCTGTGAGGAAAGCCTTCTTGAAGATCTTAACTCAGGAAATGTTCTTCAGATGCTAAGTGAGGCTTGGTTTTATCAATTACATAAGTTAAAGAAAGAGTGTATGGTGTTCTTGTTTGAATTTGGTAAAATATATGATGTTAGTGGTGATGAAATGAATACCTTCTTCCAGCATGCAGATAAGGAGTTAATCGTGGAGATGTTTCAGGAGATGCTTACAATTCCGAACCCGGTAGATGAAACTTCAATTCACATAGGAAGAGGAAATCAGTATGGATGGAAGATGATTGTTGGAGCTAACTTGAGTTGGCAAAGCTGGTGA 1077 0.4178 MVDDRVDTIGRLAQWKVDNLGPSSCKKSEPFKVGLWNWCFLIIRNHHLFIHLYPEPSRASKENPPHARIVLRISNAGVGSSRKFHISPVQEKLIKTEDDFVWTVDTAPVGRFIIDVEFLDLKICTMKGEEASSIWPSDGNLLSVAAQSSSLHCLAHMFDEAIHADLTIITADGTFRAHKAVRSASSPVFQSMFHHDLKEKESSTIHIEDMSLESCKALISYFYGTIKQEDFWKHRLPLLAAANKYDIGGLKGCCEESLLEDLNSGNVLQMLSEAWFYQLHKLKKECMVFLFEFGKIYDVSGDEMNTFFQHADKELIVEMFQEMLTIPNPVDETSIHIGRGNQYGWKMIVGANLSWQSW* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5028 358 Pfam BTB/POZ domain 156 260 IPR000210 GO:0005515
Lja1g5028 358 ProSiteProfiles BTB domain profile. 164 223 IPR000210 GO:0005515
Lja1g5028 358 PANTHER OS08G0495500 PROTEIN-RELATED 3 330 IPR044714 -
Lja1g5028 358 SUPERFAMILY POZ domain 148 260 IPR011333 -
Lja1g5028 358 SMART BTB_4 164 262 IPR000210 GO:0005515
Lja1g5028 358 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Lja1g5028 358 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 3 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5028 Lja-Chr1 70663529 70668545 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g5028 BTB 8.3e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5028 K10523 - gmx:100787262 501.516